Detailed information NTG0903287

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RZE78_RS22220
• Genome accession: NZ_CP138515
• Coordinates: 4700441..4701691 (+)
• Length: 416 a.a.
• NCBI ID: WP_319427578.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain 2u118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4695441..4706691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RZE78_RS22200 (RZE78_22200)	-	4695924..4696559 (-)	636	WP_319427573.1	LysE family transporter	-
RZE78_RS22205 (RZE78_22205)	-	4696641..4697555 (+)	915	WP_319427575.1	LysR family transcriptional regulator ArgP	-
RZE78_RS22210 (RZE78_22210)	-	4697580..4698926 (-)	1347	WP_319427576.1	pitrilysin family protein	-
RZE78_RS22215 (RZE78_22215)	-	4698945..4700411 (-)	1467	WP_319427577.1	pitrilysin family protein	-
RZE78_RS22220 (RZE78_22220)	pilA	4700441..4701691 (+)	1251	WP_319427578.1	signal recognition particle-docking protein FtsY	Machinery gene
RZE78_RS22225 (RZE78_22225)	-	4701728..4702753 (-)	1026	WP_319427579.1	hypothetical protein	-
RZE78_RS22230 (RZE78_22230)	-	4702885..4704681 (-)	1797	WP_319427580.1	ATP-binding protein	-
RZE78_RS22235 (RZE78_22235)	-	4704693..4705406 (-)	714	WP_319427581.1	response regulator transcription factor	-
RZE78_RS22240 (RZE78_22240)	-	4705572..4706036 (+)	465	Protein_4414	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 416 a.a.
• Molecular weight: 43258.95 Da
• Isoelectric Point: 5.0430

>NTDB_id=903287 RZE78_RS22220 WP_319427578.1 4700441..4701691(+) (pilA) [Variovorax paradoxus strain 2u118]
MFSFFKKKPPAESPAAPAPSPAAEPAPAPEPAPEPAAAPVRSVFSPSSWFGSKPAAEEAAPPPPAPDTAPPFVPPPPPPA
PAVANLASVPAAPAPAPAVPAVLPPPPALVTEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLM
ADAGVKATEYLLDDLRGRVKRQMATDAAQVKLLLADAITDLLQPLEKPLMIGQFTPTVIMVAGVNGAGKTTSIGKLTKHL
ASEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELK
KIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLE
DLETFNAREFALALLG

Nucleotide

• Length: 1251 bp

>NTDB_id=903287 RZE78_RS22220 WP_319427578.1 4700441..4701691(+) (pilA) [Variovorax paradoxus strain 2u118]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCACCGGCCGCCGAGCCGGCACC
TGCGCCCGAGCCCGCGCCTGAGCCCGCTGCCGCACCCGTGCGCTCGGTGTTCTCTCCGTCGAGCTGGTTCGGCTCGAAGC
CTGCCGCGGAGGAAGCGGCGCCTCCGCCTCCAGCCCCAGACACGGCGCCCCCATTTGTGCCTCCTCCGCCGCCACCCGCC
CCCGCGGTGGCGAACCTCGCGTCTGTGCCTGCTGCACCGGCACCCGCGCCTGCCGTTCCGGCCGTGCTTCCGCCCCCGCC
CGCCCTCGTCACCGAGGCTGCCATGCCGGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCG
GCACCGGCATCCAGGCGGTGTTCGTCAACGCGCAGATCGACGAAGCGCTGTACGAGGAACTCGAATCGGCCCTGCTGATG
GCCGATGCCGGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTCAAGCGCCAAATGGCGACCGATGC
GGCGCAAGTGAAGCTGCTGCTGGCCGACGCCATCACCGACCTGCTCCAGCCGCTCGAAAAGCCGCTGATGATCGGCCAGT
TCACGCCGACGGTGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTG
GCCAGCGAAGGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGTTGCTGGTCTGGGC
CGACCGCAACACGGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCTTCGGCCGTGAGCTTCGACGCGGTGACCGCCGGCA
AGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAG
AAGATCAAGCGCGTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCA
GAACGCCCTGGCGCAGGTCAGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACCG
CCAAGGGCGGCGTGCTCTGCGCCATTGCGCGCGAGCGGCCGATTCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAA
GACCTCGAGACCTTCAACGCGCGCGAGTTCGCGCTGGCTCTGCTGGGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (216-415)

• SRP54-type protein, helical bundle domain (SRP54_N) (134-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.463	100	0.493