Detailed information NTG0903269

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RZE77_RS23040
• Genome accession: NZ_CP138513
• Coordinates: 4916846..4918114 (+)
• Length: 422 a.a.
• NCBI ID: WP_319439424.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain SPNA7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4911846..4923114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RZE77_RS23020 (RZE77_23020)	-	4912326..4912961 (-)	636	WP_319439420.1	LysE/ArgO family amino acid transporter	-
RZE77_RS23025 (RZE77_23025)	-	4913043..4913960 (+)	918	WP_319439421.1	LysR family transcriptional regulator ArgP	-
RZE77_RS23030 (RZE77_23030)	-	4913985..4915331 (-)	1347	WP_319439422.1	M16 family metallopeptidase	-
RZE77_RS23035 (RZE77_23035)	-	4915350..4916816 (-)	1467	WP_319439423.1	M16 family metallopeptidase	-
RZE77_RS23040 (RZE77_23040)	pilA	4916846..4918114 (+)	1269	WP_319439424.1	signal recognition particle-docking protein FtsY	Machinery gene
RZE77_RS23045 (RZE77_23045)	-	4918151..4919188 (-)	1038	WP_319439425.1	hypothetical protein	-
RZE77_RS23050 (RZE77_23050)	-	4919323..4921116 (-)	1794	WP_319439426.1	hybrid sensor histidine kinase/response regulator	-
RZE77_RS23055 (RZE77_23055)	-	4921128..4921841 (-)	714	WP_319439427.1	response regulator transcription factor	-
RZE77_RS23060 (RZE77_23060)	-	4922007..4922471 (+)	465	WP_319439428.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 43690.48 Da
• Isoelectric Point: 5.3229

>NTDB_id=903269 RZE77_RS23040 WP_319439424.1 4916846..4918114(+) (pilA) [Variovorax paradoxus strain SPNA7]
MFSFFKKKPPAESPAAPAPSPAAEPAPAPEPAPAPVVAPVRSVFSPSSWFGSKPAAEEAAPPPPAPDTAPPVVPPPPPPA
AAPPAAPAAPNLAPVPAAPAPAPAVPAVPPPPPALVTEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEEL
ESALLMADAGVKATEYLLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIG
KLTKHLASEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLH
LMDELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIG
VGEKLEDLETFNAREFALALLG

Nucleotide

• Length: 1269 bp

>NTDB_id=903269 RZE77_RS23040 WP_319439424.1 4916846..4918114(+) (pilA) [Variovorax paradoxus strain SPNA7]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCACCGGCCGCCGAACCGGCACC
TGCGCCCGAGCCCGCGCCTGCGCCCGTTGTCGCACCCGTGCGCTCGGTGTTCTCTCCGTCGAGCTGGTTCGGCTCGAAGC
CTGCCGCGGAGGAAGCGGCGCCTCCGCCTCCAGCGCCAGACACGGCGCCCCCGGTTGTGCCCCCTCCGCCGCCGCCCGCG
GCCGCGCCACCAGCTGCTCCCGCGGCACCGAACCTCGCGCCTGTGCCTGCTGCACCGGCACCCGCGCCTGCCGTTCCGGC
CGTGCCCCCGCCCCCGCCCGCCCTCGTCACCGAGGCCGCCATGCCGGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGA
CCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCGGTGTTCGTCAACGCGCAGATCGACGAAGCGCTGTACGAGGAGCTC
GAATCGGCCCTGCTGATGGCCGATGCCGGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTCAAGCG
CCAGATGGCGACCGATGCGGCGCAAGTGAAGCGGCTGCTGGCCGATGCCATCACCGACCTGCTCCAGCCGCTCGAAAAGC
CGCTGGTGATCGGCCAGTTCACGCCGACGGTGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGC
AAGCTCACCAAGCACCTGGCCAGCGAGGGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGGGCGGCGGCGCGCGA
GCAGCTGCTGGTCTGGGCCGACCGCAACACGGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCG
ACGCAGTCACGGCCGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGTTGCAC
CTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGAT
CGACGGCAACACCGGGCAGAACGCCCTGGCGCAGGTCCGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGA
CCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTCTGCGCCATTGCGCGCGAGCGGCCGATTCCGGTCTACTTCATCGGC
GTGGGCGAGAAGCTGGAAGACCTCGAGACCTTCAACGCGCGCGAGTTCGCGCTGGCTCTGCTGGGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (222-421)

• SRP54-type protein, helical bundle domain (SRP54_N) (140-203)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.131	100	0.488