Detailed information NTG0903230

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SGW15_RS06880
• Genome accession: NZ_CP138506
• Coordinates: 1383858..1385228 (-)
• Length: 456 a.a.
• NCBI ID: WP_317060080.1
• Uniprot ID: -
• Organism: Pediococcus acidilactici strain IAF5919
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1378858..1390228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGW15_RS06860 (SGW15_06860)	-	1379000..1379413 (-)	414	WP_004165556.1	Mini-ribonuclease 3	-
SGW15_RS06865 (SGW15_06865)	cysS	1379406..1380824 (-)	1419	WP_024862956.1	cysteine--tRNA ligase	-
SGW15_RS06870 (SGW15_06870)	gltX	1380981..1382468 (-)	1488	WP_317060081.1	glutamate--tRNA ligase	-
SGW15_RS06875 (SGW15_06875)	-	1382594..1383742 (-)	1149	WP_002832360.1	PIN/TRAM domain-containing protein	-
SGW15_RS06880 (SGW15_06880)	radA	1383858..1385228 (-)	1371	WP_317060080.1	DNA repair protein RadA	Machinery gene
SGW15_RS06885 (SGW15_06885)	-	1385322..1385858 (-)	537	WP_224428801.1	dUTP diphosphatase	-
SGW15_RS06890 (SGW15_06890)	-	1385987..1386310 (+)	324	WP_224428802.1	GNAT family N-acetyltransferase	-
SGW15_RS06895 (SGW15_06895)	rpiA	1386321..1387007 (+)	687	WP_002832365.1	ribose-5-phosphate isomerase RpiA	-
SGW15_RS06900 (SGW15_06900)	-	1387056..1388402 (+)	1347	WP_002832366.1	aminopeptidase C	-
SGW15_RS06905 (SGW15_06905)	-	1388748..1389419 (-)	672	WP_070366360.1	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	-
SGW15_RS06910 (SGW15_06910)	accA	1389443..1390210 (-)	768	WP_241531619.1	carboxyltransferase subunit alpha	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50266.82 Da
• Isoelectric Point: 7.4153

>NTDB_id=903230 SGW15_RS06880 WP_317060080.1 1383858..1385228(-) (radA) [Pediococcus acidilactici strain IAF5919]
MAKVKTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKAERKSRVSFDGKHTQPQLISDVAMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAETQRKVLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRA
VIEELHPEYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLKDASGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRAKLTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTG
EIRRINRIEQRVAEAQKLGFKRILIPKNNLKGWQPPEGIEVVGVATIADAIRRAFN

Nucleotide

• Length: 1371 bp

>NTDB_id=903230 SGW15_RS06880 WP_317060080.1 1383858..1385228(-) (radA) [Pediococcus acidilactici strain IAF5919]
ATGGCAAAAGTTAAGACCCAGTTTGTATGCAATAATTGCGGATACGCCTCCCCTAAATTTTTAGGACGCTGTCCCAATTG
TGGTAAGTGGAACACTTTAGTTGAAGAACGGATGAGCGATCCAAAGGCTGAACGAAAAAGTCGGGTGAGCTTTGACGGCA
AACATACGCAACCACAGCTGATTTCGGACGTCGCGATGCACGAAGAACCCCGGGTAAAAACCGGGATGGAAGAACTTAAC
CGCGTGCTTGGTGGCGGGGTGGTTGACGGCTCCCTAGTCTTAATTGGTGGGGATCCTGGAATCGGAAAATCAACCCTGTT
GTTACAGCTATCAGGACAGTTGGCAGAGACGCAACGCAAGGTACTTTACGTTTCTGGTGAAGAAAGTGCTTCCCAGATTA
AGATGCGTGCCGAACGATTGAAAGTCAATAGTGAACGCTTCTATTTGTATCCAGAGACCGATATGTCTAGCGTGCGGGCG
GTGATTGAGGAGTTACACCCCGAATACGTGATCATTGATTCGGTTCAGACCATGCAGGAACCGGATATTGAATCGGCGGT
GGGGAGCGTTTCTCAAATTCGAGAAATTACCGCAGAATTAATGCAAATCGCGAAAACCAATAACATTACCATCTTCATCG
TTGGTCACGTGACCAAGGGCGGTGCAATTGCGGGGCCGAAGATTTTGGAACACATGGTGGATACGGTGCTTTACTTTGAA
GGTGATCTGCACCACACTTACCGGATCCTGCGAGCGGTGAAGAACCGGTTTGGTTCCACGAACGAATTAGGAATCTTTGA
GATGCGCGAAGAAGGGTTACGCGAGGTGGCTAACCCGTCAGAAATTTTCTTAGAAGAGCGGCTAAAAGATGCTTCGGGAT
CGGCAATTGTAGTTTCAATGGAAGGAACTCGGCCGATTTTAGTTGAAATACAAGCCTTGATTACGCCCACCATCTTCGGC
AATGCGCAGCGCACGGCGAGCGGGTTGGACCGCAACCGGGTTTCGCTGATCATGGCGGTGCTCGAAAAACGGGCAAAGCT
TACTTTGCAAAACCAAGACGCCTATTTAAAGGCGGCGGGCGGCGTCAAGCTTGACGAACCCGCAATTGACTTAGCGTTGG
CGATTAGTATTGTTTCAAGTTTTAAAAATCAGGGAACCCGGCCGACCGATAGTTTTGTTGGTGAAATCGGCTTAACTGGT
GAAATTCGGCGGATTAACCGAATTGAACAACGGGTCGCTGAAGCACAAAAGCTTGGTTTTAAGCGGATTTTGATTCCGAA
GAATAATTTGAAGGGGTGGCAGCCCCCCGAAGGAATTGAAGTTGTAGGGGTAGCTACGATTGCCGACGCGATTCGGCGGG
CATTTAATTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (362-429)

• AAA domain (AAA_25) (72-221)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	66.813	99.781	0.667
radA	Streptococcus mitis NCTC 12261	66.593	99.781	0.664
radA	Streptococcus pneumoniae Rx1	66.593	99.781	0.664
radA	Streptococcus pneumoniae TIGR4	66.593	99.781	0.664
radA	Streptococcus pneumoniae D39	66.593	99.781	0.664
radA	Streptococcus pneumoniae R6	66.593	99.781	0.664
radA	Bacillus subtilis subsp. subtilis str. 168	65.132	100	0.651