Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SGW12_RS08005 Genome accession   NZ_CP138501
Coordinates   1673634..1675004 (+) Length   456 a.a.
NCBI ID   WP_002832361.1    Uniprot ID   A0AAN5Y9S9
Organism   Pediococcus acidilactici strain P72N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1668634..1680004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW12_RS07980 (SGW12_07975) - 1669395..1670066 (+) 672 WP_002832370.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  SGW12_RS07985 (SGW12_07980) - 1670460..1671806 (-) 1347 WP_002832366.1 aminopeptidase C -
  SGW12_RS07990 (SGW12_07985) rpiA 1671855..1672541 (-) 687 WP_002832365.1 ribose-5-phosphate isomerase RpiA -
  SGW12_RS07995 (SGW12_07990) - 1672552..1672875 (-) 324 WP_002832363.1 GNAT family N-acetyltransferase -
  SGW12_RS08000 (SGW12_07995) - 1673004..1673540 (+) 537 WP_036671297.1 dUTP diphosphatase -
  SGW12_RS08005 (SGW12_08000) radA 1673634..1675004 (+) 1371 WP_002832361.1 DNA repair protein RadA Machinery gene
  SGW12_RS08010 (SGW12_08005) - 1675120..1676268 (+) 1149 WP_002832360.1 PIN/TRAM domain-containing protein -
  SGW12_RS08015 (SGW12_08010) gltX 1676393..1677880 (+) 1488 WP_036671288.1 glutamate--tRNA ligase -
  SGW12_RS08020 (SGW12_08015) cysS 1678037..1679455 (+) 1419 WP_004166127.1 cysteine--tRNA ligase -
  SGW12_RS08025 (SGW12_08020) - 1679448..1679861 (+) 414 WP_002832357.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50252.79 Da        Isoelectric Point: 7.4153

>NTDB_id=903184 SGW12_RS08005 WP_002832361.1 1673634..1675004(+) (radA) [Pediococcus acidilactici strain P72N]
MAKVKTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKAERKSRVSFDGKHTQPQLISDVAMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAETQRKVLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRA
VIEELHPEYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLKDASGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRAKLTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRILIPKNNLKGWQPPEGIEVVGVATIADAIRRAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=903184 SGW12_RS08005 WP_002832361.1 1673634..1675004(+) (radA) [Pediococcus acidilactici strain P72N]
ATGGCAAAAGTTAAGACCCAGTTTGTATGCAATAATTGCGGATACGCCTCCCCTAAATTTTTAGGACGCTGTCCCAATTG
TGGTAAGTGGAACACTTTAGTTGAAGAACGGATGAGCGACCCAAAGGCCGAACGAAAAAGTCGGGTGAGCTTTGATGGCA
AACATACGCAACCACAGTTGATTTCGGATGTCGCGATGCACGAGGAGCCCCGGGTAAAGACCGGGATGGAAGAACTTAAC
CGCGTGCTTGGTGGCGGGGTGGTTGACGGCTCCCTAGTCTTAATTGGTGGGGATCCTGGAATCGGAAAATCAACCCTGTT
GTTACAGCTATCAGGACAGTTGGCAGAGACGCAACGCAAAGTACTTTACGTTTCGGGTGAAGAAAGTGCTTCCCAGATTA
AGATGCGTGCCGAACGCTTGAAAGTTAATAGTGAGCGCTTCTATTTGTATCCAGAGACGGATATGTCTAGCGTTCGGGCG
GTGATTGAGGAGTTACACCCCGAATACGTGATCATTGATTCGGTTCAGACCATGCAGGAACCCGATATCGAATCGGCAGT
GGGGAGCGTTTCTCAAATTCGAGAAATTACCGCAGAATTAATGCAAATCGCGAAAACCAATAACATTACCATCTTCATCG
TTGGTCACGTGACCAAGGGCGGCGCAATTGCGGGGCCGAAGATTTTGGAACATATGGTGGATACGGTACTTTACTTTGAA
GGCGATCTGCACCACACTTACCGGATCCTGCGGGCGGTGAAGAACCGCTTTGGTTCCACGAACGAATTAGGAATCTTTGA
GATGCGTGAAGAAGGGTTACGCGAAGTGGCTAACCCGTCAGAAATTTTCTTAGAAGAGCGTTTGAAAGATGCTTCGGGAT
CGGCAATTGTAGTTTCAATGGAAGGAACACGGCCGATTTTAGTTGAAATACAAGCCTTGATCACGCCCACCATCTTTGGC
AATGCGCAGCGGACGGCGAGCGGGTTAGACCGCAACCGAGTTTCGCTGATCATGGCGGTGCTCGAAAAACGGGCAAAGCT
TACTTTGCAAAACCAAGACGCCTATTTAAAGGCGGCGGGCGGCGTCAAGCTTGACGAACCCGCAATTGACTTAGCGTTGG
CGATTAGTATTGTTTCAAGTTTTAAAAATCAGGGAACCCGGCCGACCGATAGTTTTGTTGGTGAAATCGGCTTAACTGGT
GAAATTCGGCGGGTTAACCGAATTGAACAACGGGTCGCTGAGGCACAAAAGCTTGGTTTTAAGCGGATTTTGATTCCGAA
GAATAATTTGAAGGGGTGGCAGCCCCCCGAAGGAATTGAAGTTGTAGGGGTGGCTACGATTGCCGACGCGATTCGGCGGG
CATTTAATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.033

99.781

0.669
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.654