Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ABI116_RS09735 Genome accession   NZ_CP157214
Coordinates   1919427..1921430 (+) Length   667 a.a.
NCBI ID   WP_003245397.1    Uniprot ID   P45694
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1914427..1926430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI116_RS09695 (ABI116_09695) pghL 1914787..1915545 (+) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -
  ABI116_RS09700 (ABI116_09700) - 1915572..1916021 (-) 450 WP_003245454.1 YndM family protein -
  ABI116_RS09705 (ABI116_09705) fosM 1916229..1916663 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  ABI116_RS09710 (ABI116_09710) - 1916572..1916868 (+) 297 WP_223257629.1 hypothetical protein -
  ABI116_RS09715 (ABI116_09715) dinR/lexA 1917205..1917822 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  ABI116_RS09720 (ABI116_09720) yneA 1917972..1918289 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  ABI116_RS09725 (ABI116_09725) dinL 1918308..1918961 (+) 654 WP_003231596.1 recombinase family protein -
  ABI116_RS09730 (ABI116_09730) ynzC 1919025..1919258 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  ABI116_RS09735 (ABI116_09735) recP/tkt 1919427..1921430 (+) 2004 WP_003245397.1 transketolase Machinery gene
  ABI116_RS09740 (ABI116_09740) sirA 1921583..1922029 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  ABI116_RS09745 (ABI116_09745) yneF 1922115..1922333 (+) 219 WP_003221221.1 YneF family protein -
  ABI116_RS09750 (ABI116_09750) ynzD 1922407..1922580 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  ABI116_RS09755 (ABI116_09755) ccdA 1922800..1923507 (+) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  ABI116_RS09760 (ABI116_09760) yneI 1923596..1923958 (+) 363 WP_003245707.1 response regulator -
  ABI116_RS09765 (ABI116_09765) yneJ 1924037..1924528 (+) 492 WP_010886519.1 CcdC family protein -
  ABI116_RS09770 (ABI116_09770) yneK 1924559..1924987 (-) 429 WP_003231580.1 DynA interaction protein YneK -
  ABI116_RS09775 (ABI116_09775) cotM 1925221..1925613 (-) 393 WP_010886520.1 outer spore coat protein CotM -
  ABI116_RS09780 (ABI116_09780) sspP 1925694..1925840 (-) 147 WP_003221237.1 small acid-soluble spore protein P -
  ABI116_RS09785 (ABI116_09785) sspO 1925872..1926018 (-) 147 WP_003244839.1 acid-soluble spore protein SspO -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72344.44 Da        Isoelectric Point: 4.7291

>NTDB_id=903023 ABI116_RS09735 WP_003245397.1 1919427..1921430(+) (recP/tkt) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAVAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTSEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=903023 ABI116_RS09735 WP_003245397.1 1919427..1921430(+) (recP/tkt) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAAGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGTAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGTTTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCGGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACATCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCTGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45694

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562