Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ABI116_RS02420 Genome accession   NZ_CP157214
Coordinates   475658..476092 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470658..481092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI116_RS02390 (ABI116_02390) ydaD 471308..472168 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  ABI116_RS02395 (ABI116_02395) lyxE 472184..472687 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ABI116_RS02400 (ABI116_02400) ydaF 472773..473324 (+) 552 WP_003246691.1 GNAT family protein -
  ABI116_RS02405 (ABI116_02405) ydaG 473402..473824 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ABI116_RS02410 (ABI116_02410) amj 474330..475139 (+) 810 WP_003234394.1 lipid II flippase Amj -
  ABI116_RS02415 (ABI116_02415) ydzA 475183..475473 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  ABI116_RS02420 (ABI116_02420) lrpC 475658..476092 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ABI116_RS02425 (ABI116_02425) topB 476157..478340 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  ABI116_RS02430 (ABI116_02430) epsJ 478543..479631 (+) 1089 WP_003246551.1 lipoprotein -
  ABI116_RS02435 (ABI116_02435) epsK 479612..480463 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=902962 ABI116_RS02420 WP_003246585.1 475658..476092(+) (lrpC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=902962 ABI116_RS02420 WP_003246585.1 475658..476092(+) (lrpC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1