Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SGJ46_RS13315 Genome accession   NZ_CP138461
Coordinates   2761415..2761741 (-) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain CZH-5     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2756415..2766741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS13295 - 2756611..2757318 (-) 708 WP_005181667.1 FHA domain-containing protein -
  SGJ46_RS13300 gspD 2757385..2759634 (-) 2250 WP_329415330.1 type II secretion system secretin GspD -
  SGJ46_RS13305 - 2759675..2760511 (-) 837 WP_177155258.1 type II secretion system protein N -
  SGJ46_RS13310 gspN 2760511..2761251 (-) 741 WP_005181650.1 type II secretion system protein N -
  SGJ46_RS13315 hns 2761415..2761741 (-) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  SGJ46_RS13320 - 2761887..2762315 (-) 429 WP_005181644.1 acyl-CoA thioesterase -
  SGJ46_RS13325 - 2762332..2763519 (-) 1188 WP_034598119.1 hypothetical protein -
  SGJ46_RS13330 - 2763522..2764367 (-) 846 WP_005181639.1 hypothetical protein -
  SGJ46_RS13335 - 2764364..2765143 (-) 780 WP_005181637.1 uroporphyrinogen-III synthase -
  SGJ46_RS13340 hemC 2765145..2766062 (-) 918 WP_034598116.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=902940 SGJ46_RS13315 WP_005181647.1 2761415..2761741(-) (hns) [Acinetobacter indicus strain CZH-5]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=902940 SGJ46_RS13315 WP_005181647.1 2761415..2761741(-) (hns) [Acinetobacter indicus strain CZH-5]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852