Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SGJ46_RS12840 Genome accession   NZ_CP138461
Coordinates   2653455..2655677 (+) Length   740 a.a.
NCBI ID   WP_177155284.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2648455..2660677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS12815 - 2648457..2649296 (+) 840 WP_005181878.1 HlyC/CorC family transporter -
  SGJ46_RS12820 lnt 2649293..2650852 (+) 1560 WP_329415206.1 apolipoprotein N-acyltransferase -
  SGJ46_RS12825 - 2650994..2651329 (-) 336 WP_045795389.1 hypothetical protein -
  SGJ46_RS12830 gspG 2651609..2652046 (-) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  SGJ46_RS12835 gspF 2652098..2653303 (-) 1206 WP_005181870.1 type II secretion system inner membrane protein GspF -
  SGJ46_RS12840 priA 2653455..2655677 (+) 2223 WP_177155284.1 primosomal protein N' Machinery gene
  SGJ46_RS12845 - 2655728..2657569 (+) 1842 WP_329415215.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  SGJ46_RS12850 - 2657620..2658495 (+) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  SGJ46_RS12855 - 2658908..2659369 (+) 462 WP_127800189.1 DUF2147 domain-containing protein -
  SGJ46_RS12860 - 2659773..2660111 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  SGJ46_RS12865 - 2660188..2660457 (+) 270 WP_329415224.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84247.37 Da        Isoelectric Point: 8.8759

>NTDB_id=902936 SGJ46_RS12840 WP_177155284.1 2653455..2655677(+) (priA) [Acinetobacter indicus strain CZH-5]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKRAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIQ
RKPEQCPQCQHNELKTLGMGTAKVEENLQQLFPDYDVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LYHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=902936 SGJ46_RS12840 WP_177155284.1 2653455..2655677(+) (priA) [Acinetobacter indicus strain CZH-5]
ATGCCAAATTCGCCCGTTCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TAGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCGTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCCTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACTTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTATTG
CGATCTGGAGCAGCAGGATTTTAGCCCGGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGTGACCAGAAAC
GGGCCATTGAAACCGTACTGAAAGCGCAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGTAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAGGAAGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACTGGCAAGGCTTCGATTATTCTTGGTACACGCTCGGCAATTTATACCCCGCTG
CCCAATCTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
CGATGTGGCCTTATACCGTGCTCATTTAGAACACTGCCCGGTGATTCTCGGTTCGGCCACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCGAAAATTCACATC
ATTGATTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAAAAACGCCTGCAGAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGTCATCATTGTGGCACCATTCAA
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAATGAACTGAAAACCCTGGGCATGGGCACAGCCAAGGTTGAAGAAAA
CCTGCAACAGCTGTTCCCGGATTACGATGTGGTGCGGGTGGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTGCTTGGCACTCAAATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTGACTCTAGTGGCGATTTTAGACATTGATGCCGGCCTGTTAAGTGTTGATATTCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCTGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCTTGCGTCCTGATCATC
CGCTGCTGAGTACCCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTACTG
CCCCCGTTTCGCTATACTGCGCTGATTCGCTGCGAATCGAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCGGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGTATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.486

100

0.738