Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABI424_RS09280 Genome accession   NZ_CP157211
Coordinates   1984697..1986889 (-) Length   730 a.a.
NCBI ID   WP_012340243.1    Uniprot ID   -
Organism   Histophilus somni strain 23-038383_S91     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1979697..1991889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS09260 (ABI424_001854) - 1981248..1982303 (+) 1056 WP_011609282.1 rod shape-determining protein -
  ABI424_RS09265 (ABI424_001855) mreC 1982385..1983437 (+) 1053 WP_012340241.1 rod shape-determining protein MreC -
  ABI424_RS09270 (ABI424_001856) mreD 1983437..1983925 (+) 489 WP_011609280.1 rod shape-determining protein MreD -
  ABI424_RS09275 (ABI424_001857) - 1983951..1984625 (-) 675 WP_012340242.1 SPOR domain-containing protein -
  ABI424_RS09280 (ABI424_001858) priA 1984697..1986889 (-) 2193 WP_012340243.1 primosomal protein N' Machinery gene
  ABI424_RS09285 (ABI424_001859) mazG 1986894..1987703 (-) 810 WP_041605067.1 nucleoside triphosphate pyrophosphohydrolase -
  ABI424_RS09290 (ABI424_001860) - 1988216..1989229 (+) 1014 WP_012340245.1 HEXXH motif-containing putative peptide modification protein -
  ABI424_RS09295 (ABI424_001861) - 1989213..1989614 (+) 402 WP_348534004.1 carboxymuconolactone decarboxylase family protein -
  ABI424_RS09300 (ABI424_001862) - 1989604..1990833 (+) 1230 WP_041605069.1 MFS transporter -
  ABI424_RS09305 (ABI424_001863) - 1990896..1991009 (-) 114 Protein_1797 nucleoside triphosphate pyrophosphohydrolase -
  ABI424_RS09310 (ABI424_001864) uspA 1991178..1991603 (+) 426 WP_011609276.1 universal stress protein UspA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 83612.33 Da        Isoelectric Point: 9.7902

>NTDB_id=902934 ABI424_RS09280 WP_012340243.1 1984697..1986889(-) (priA) [Histophilus somni strain 23-038383_S91]
MKLARVALAVPLFSFFDYLIPNALSTAVGCRVLVPFGRQKLIGIVTELPEKTEIDISQLKPIISVLDHHSVFTPELWRLL
HWGADYYQFPLGEVLISSLPSKLRRGESAVEKSTFFFQLTEQGQQALDNNKLKRAKKQLEALHYLQKNITEKNNNPFHNQ
VWSTLKSKGYISEQEIHKTSISWQQKLNHQSIVKTNDRLPLNQEQALALSQLIFQSGFICWLLEGVTGSGKTEIYLQFIE
EILQQEKQILVLVSEIGLTPQTVQRFQARFNIEIDVLHSNLNDNQRLKVWQRSKNGESAVIIGTRSALFTPFKQLGLIIV
DEEHDLSFKQQDNWRYHARDLAVVYAKQLDIPIVLGSATPSLESINNVRQGKYRHITLKKRAKNTTALRHSVIDLKRQIV
HNGLSETLLTMMKNHLKKGNQVLLFLNRRGFAPVLLCHECGWIVECQHCEKPYTYHQHQRVLRCHHCGTQKPIPMQCVNC
GSTHLVTTGLGTEQLEESLNQRFPNYKITRIDRDSTARKGKLEQYLRDIQLGKSQILIGTQMLAKGHHFPNVTLVALLNV
DSALFSTDFRAEERLAQLYVQVAGRAGREEKQGEVVLQTHYPEHPLLVSLLSQGYPYFAQQALTLRNQMGLPPFSAQALF
KAQSRHSQKAEEVLHQIAAYFHNTSSKNLQILGPIQAPFSKKAGQYRWHLLLQHKSKAELQQILHSFQQENFLRLQQVRL
VLDIDPLDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=902934 ABI424_RS09280 WP_012340243.1 1984697..1986889(-) (priA) [Histophilus somni strain 23-038383_S91]
ATGAAACTTGCACGAGTTGCTCTTGCCGTTCCTCTGTTTAGTTTTTTTGATTATCTTATTCCAAATGCCCTTTCAACCGC
TGTCGGCTGTCGAGTATTAGTCCCTTTCGGACGACAAAAATTAATTGGTATTGTCACTGAGTTACCTGAAAAAACGGAGA
TAGATATTTCACAACTCAAACCCATTATCTCCGTTCTTGATCATCATTCTGTTTTTACCCCTGAATTATGGCGTCTACTA
CATTGGGGAGCGGACTATTATCAATTTCCCTTAGGAGAAGTATTAATAAGCAGCTTGCCAAGCAAATTACGCCGTGGTGA
AAGTGCGGTAGAAAAATCAACATTTTTCTTTCAACTAACGGAACAGGGGCAACAAGCATTAGACAACAACAAGTTAAAAA
GAGCAAAAAAACAGCTTGAGGCTCTACATTATCTACAAAAAAATATCACAGAAAAAAATAACAATCCTTTTCATAACCAA
GTTTGGAGCACCTTAAAAAGTAAGGGGTATATATCTGAACAAGAAATACATAAAACAAGTATCTCTTGGCAACAAAAATT
AAATCATCAATCTATTGTAAAAACTAACGATCGTCTTCCTCTTAACCAAGAGCAAGCTCTTGCACTCAGCCAATTAATCT
TTCAATCCGGATTTATCTGTTGGTTATTAGAAGGCGTAACCGGTTCAGGAAAAACAGAAATCTATCTTCAATTTATTGAG
GAAATTTTACAACAAGAGAAACAAATTTTAGTACTGGTATCGGAAATTGGTCTCACGCCACAAACAGTACAACGCTTTCA
AGCGAGATTTAATATTGAAATTGATGTGTTACATTCAAATTTAAATGATAACCAACGTTTGAAAGTATGGCAACGTTCTA
AAAATGGCGAAAGTGCGGTCATCATCGGCACGAGATCAGCACTATTTACTCCCTTTAAACAACTGGGGCTAATTATCGTT
GATGAAGAACATGATCTTTCATTTAAACAACAAGATAACTGGCGTTATCATGCTCGTGATCTTGCAGTAGTTTACGCTAA
ACAATTGGATATTCCTATCGTGTTAGGATCTGCAACGCCAAGTTTGGAAAGCATCAATAATGTGCGACAAGGCAAATATC
GTCACATCACACTCAAAAAAAGAGCAAAAAATACTACCGCACTTCGTCATTCGGTTATCGACCTAAAGCGACAAATAGTA
CATAACGGTTTATCTGAAACCTTGTTGACAATGATGAAAAATCACTTAAAAAAGGGAAATCAGGTTTTATTGTTCTTAAA
CCGCCGTGGTTTCGCACCTGTTCTACTTTGTCATGAATGTGGCTGGATTGTAGAATGCCAACATTGTGAAAAGCCTTATA
CTTATCATCAACATCAGCGAGTTCTACGTTGCCACCATTGCGGAACACAAAAACCTATTCCAATGCAATGTGTAAATTGC
GGTTCGACACATTTAGTGACGACAGGTTTAGGAACAGAACAATTGGAAGAAAGTTTAAACCAACGTTTTCCAAACTATAA
GATTACCCGTATTGACAGAGATAGTACCGCTCGCAAAGGAAAATTGGAACAATATCTACGGGATATTCAATTAGGAAAAA
GCCAAATTTTAATTGGTACACAAATGCTAGCCAAAGGGCATCATTTCCCCAATGTAACTTTAGTGGCACTGTTAAACGTG
GATAGTGCACTTTTTTCTACTGATTTTCGGGCAGAAGAACGTTTAGCCCAACTTTATGTTCAAGTTGCAGGACGAGCCGG
ACGAGAAGAAAAACAAGGAGAGGTCGTCTTGCAAACCCACTATCCAGAACATCCTTTATTGGTTAGTTTATTAAGTCAAG
GTTATCCTTACTTTGCCCAACAAGCCCTCACTTTGCGTAACCAAATGGGGTTACCGCCTTTCAGTGCTCAAGCACTGTTT
AAAGCCCAAAGTCGCCACTCACAAAAAGCTGAGGAAGTGTTACACCAAATTGCCGCCTATTTTCATAATACCTCAAGCAA
AAACTTGCAAATCTTGGGGCCTATCCAAGCACCTTTTAGCAAAAAAGCGGGGCAATATCGCTGGCACCTTTTATTACAAC
ATAAATCCAAAGCAGAATTACAACAAATTTTACACTCTTTTCAGCAAGAAAATTTTTTAAGATTACAACAAGTGCGGTTA
GTTTTAGATATAGATCCGCTGGATTTGAGCTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(494-588)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)

DEAD/DEAH box helicase (DEAD)

(221-366)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

42.722

100

0.434