Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   SGJ46_RS03890 Genome accession   NZ_CP138461
Coordinates   809460..813956 (+) Length   1498 a.a.
NCBI ID   WP_329416681.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 804460..818956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS03865 - 804954..805547 (-) 594 WP_171525083.1 hypothetical protein -
  SGJ46_RS03870 pilG 805877..806260 (+) 384 WP_005179541.1 twitching motility response regulator PilG Regulator
  SGJ46_RS03875 - 806277..806645 (+) 369 WP_005179539.1 response regulator -
  SGJ46_RS03880 - 806649..807185 (+) 537 WP_005179538.1 chemotaxis protein CheW -
  SGJ46_RS03885 - 807231..809303 (+) 2073 WP_177155922.1 methyl-accepting chemotaxis protein -
  SGJ46_RS03890 chpA 809460..813956 (+) 4497 WP_329416681.1 Hpt domain-containing protein Regulator
  SGJ46_RS03895 - 813953..814414 (+) 462 WP_075167114.1 hypothetical protein -
  SGJ46_RS03900 dapE 814484..815617 (-) 1134 WP_104488695.1 succinyl-diaminopimelate desuccinylase -
  SGJ46_RS03905 - 815744..815890 (-) 147 WP_005179532.1 entericidin A/B family lipoprotein -
  SGJ46_RS03910 - 815991..816893 (-) 903 WP_168399708.1 DUF1853 family protein -
  SGJ46_RS03915 - 816984..817373 (+) 390 WP_075167111.1 YbaN family protein -
  SGJ46_RS03920 elsL 817370..817900 (+) 531 WP_005179524.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1498 a.a.        Molecular weight: 166904.21 Da        Isoelectric Point: 4.2803

>NTDB_id=902922 SGJ46_RS03890 WP_329416681.1 809460..813956(+) (chpA) [Acinetobacter indicus strain CZH-5]
MKEILKNLVETTALPEDSYLDQDAEILEIFVEEIEEIFVELKDLLAQWATQPNDQETLTTIRRHFHTLKGSGRMVGAKSA
GELAWTVEDTLNRVISGSLTLSAQVQQFATAVANVFEYKLYPSFKHAQPMALDLRPLVLLGQQLQQNLSPEPALEELLQL
ASSLTSSDSITGLEFDTASTDEQGAADTELAVADSVEEDPLAAETLAIFIEEAEEHLLTVDRFLAHDELKTQDYNGLIRA
LHTLRGSSSMAHIEQIFDASSKVENLFKTLLQDEIESTSKETALLLQYAEFVRDYLHLLPQNDSTGMDRIYQTFNTAWQN
YGFSLEDVDESVNPQGLVSKLIELNIDQLLDAELEFDQRAQAEYPEYIQTLSHQAKLLVERTDNRASQGIHDFTQELQLA
YAALLDKPSLLHSDYAFELFGQAHQEFIHLFDTLAAGQRVSLSEDAQQIINNLSAFVQQDIEALSPETDTTEAVTETAEA
GAGLNLAVLSQRLEADRQYMDSAEANKDFDPDLLDIFLEEAEELLAGIDQDVNSWSQDPSNTAALNNLMRHLHTLKGGAN
MITASHIGLIAHHLETIYERIINRQMNASTALIQIIRLVQDNIADRIQTIREQQVDYPAQESLAILENISELAQGQLVEA
ESLAVAAEATSSADVQQSDAAALEFELEQPEPAETAYAAPEDEQQPDTSSEPVLEDAPTLAEQTIPTDAVSTTENDGEDN
LHSIVEETFLEEAEELLDTTESLLKQWFDHRSDRSILLQLQRAAHSLKGGARMAEIEPVAVIAYQLENTFEQFAVHQFNS
NAYDALLNTTVAWLKEAIFQRDYSNFDSLKASLESIEYVNATAQLPERFNTADLLAPSKTFEFVQGDGAEPPSMQGEWSE
TAQLDNSNEMIRISADLVEKMIDLSGENAINRSRIEMELGQLGGTLNEMELAIKRLADQLRRMEGELESQIIAKHGDEHS
RYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKTTLADKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRI
VRQTSSTLNRPAELVVHNTEGELDRTILERLISPFEHMLRNAVDHGLEDAAVRKQAAKPEVGQIELNIGRQGTDVLISFT
DDGKGIDETKIHAKALSLGLIQPEQQLDKKEILQLIFHPGFSTAQAVTQISGRGVGLDVVQSEIKALGGHVEVDSELGKG
TTFSIRVPTTVAVSDALMVKVGDQQFAIPLAQIDRIVRISPSALESYFSSKDDYFKIDQQNYKLRYLSEFVANQPLPRLS
NIAHSLPVLLIKGNTGQTIALLVDQLIGSRGQIVMKPIGQQFSSVGSIAGATILGDGQVCLILDGQNIARQIQATQRIKH
VMEPREVQRRDTRHLVMIVDDSVTVRKVTSRLLERQGFDVVTAKDGVDAIEQLENVKPDLMLLDIEMPRMDGFEVTTLVR
RHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIENILHSSEAKA

Nucleotide


Download         Length: 4497 bp        

>NTDB_id=902922 SGJ46_RS03890 WP_329416681.1 809460..813956(+) (chpA) [Acinetobacter indicus strain CZH-5]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACTGCGCTTCCTGAAGATAGTTATCTTGATCAAGATGCAGAAATTCT
AGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGCTAAAAGACCTGTTGGCTCAATGGGCCACGCAGCCTAACG
ATCAGGAAACGCTAACCACCATTCGCCGTCATTTTCATACCTTAAAAGGTTCGGGACGTATGGTTGGGGCCAAGTCGGCA
GGGGAGCTGGCCTGGACGGTTGAAGATACCTTAAACCGGGTCATTTCCGGTAGTCTGACCCTGTCAGCGCAGGTGCAGCA
GTTTGCAACCGCGGTGGCGAACGTCTTTGAATACAAACTTTATCCAAGCTTTAAACATGCTCAGCCGATGGCACTGGACC
TGCGTCCATTGGTGCTGTTAGGACAACAATTACAACAAAATTTAAGTCCTGAACCGGCTTTAGAAGAGCTGTTACAACTG
GCGAGCAGCTTAACATCCAGCGACAGTATTACCGGTCTAGAGTTTGATACAGCAAGCACTGATGAGCAGGGTGCTGCAGA
CACCGAGCTAGCTGTGGCTGATAGTGTTGAAGAAGATCCGCTAGCAGCTGAAACACTGGCCATCTTTATTGAAGAAGCGG
AAGAACACCTGTTAACAGTGGACCGCTTCCTGGCACACGATGAGCTGAAAACCCAGGATTACAATGGCCTGATTCGTGCC
CTGCATACCTTGCGCGGCAGTTCATCCATGGCACACATCGAGCAGATTTTTGATGCCAGCTCCAAGGTCGAAAACCTGTT
CAAGACCTTGTTGCAGGATGAAATTGAATCGACCTCCAAAGAAACCGCACTGTTATTGCAATATGCTGAATTTGTGCGGG
ATTATCTGCATCTGTTGCCACAGAATGACAGTACCGGCATGGACCGGATTTATCAGACCTTCAATACTGCATGGCAGAAC
TACGGCTTTAGCCTGGAAGATGTCGATGAGTCAGTGAATCCGCAAGGTTTGGTATCCAAGCTGATTGAACTGAATATTGA
TCAGTTACTCGATGCCGAGTTAGAATTTGACCAGCGTGCGCAGGCTGAATATCCGGAATATATCCAGACCCTGAGCCATC
AGGCGAAGCTGCTGGTAGAGCGTACCGATAACCGCGCCTCTCAGGGTATTCATGATTTTACCCAGGAATTACAACTGGCC
TATGCGGCCTTGCTGGACAAGCCAAGCTTGTTGCATAGCGATTATGCCTTTGAATTATTTGGACAGGCGCATCAGGAATT
TATCCATCTGTTTGATACCCTGGCTGCCGGGCAACGCGTCAGCTTAAGCGAGGATGCCCAGCAGATCATCAATAACCTGA
GTGCCTTTGTACAGCAGGATATTGAAGCACTAAGCCCAGAAACTGATACCACAGAAGCTGTCACCGAAACGGCTGAAGCC
GGTGCAGGGCTGAATCTGGCCGTATTGTCACAGCGTCTGGAAGCTGACCGTCAATACATGGACAGCGCTGAGGCCAATAA
GGACTTTGATCCAGACTTGCTGGACATTTTCCTGGAAGAAGCCGAAGAGTTACTCGCGGGTATTGACCAGGATGTTAATA
GCTGGAGCCAAGACCCGAGCAATACTGCTGCACTGAACAATCTGATGCGCCATTTGCACACCTTAAAAGGTGGCGCCAAC
ATGATTACAGCCAGCCATATCGGTCTGATTGCGCACCATTTAGAAACCATTTATGAGCGCATCATTAACCGTCAAATGAA
TGCATCAACCGCATTGATTCAGATTATCCGTCTGGTTCAGGACAATATTGCGGACCGTATCCAGACCATCCGTGAACAGC
AGGTCGATTATCCGGCGCAAGAATCACTGGCGATTCTGGAAAATATTAGCGAACTAGCCCAAGGTCAACTGGTTGAAGCT
GAATCGCTGGCAGTGGCGGCTGAAGCAACCTCTAGCGCAGATGTACAACAGTCTGATGCAGCTGCACTTGAATTTGAGTT
GGAACAGCCAGAACCTGCAGAAACAGCCTATGCTGCGCCTGAAGATGAGCAGCAGCCAGATACTAGCAGCGAACCGGTAC
TGGAAGATGCACCGACTCTGGCCGAGCAAACCATCCCTACAGATGCGGTATCTACTACTGAAAATGACGGTGAAGACAAT
CTGCATTCGATTGTGGAAGAAACCTTCCTGGAAGAGGCTGAAGAGCTGCTCGACACCACGGAAAGCCTGTTAAAGCAGTG
GTTTGACCATCGTAGTGACCGGAGCATTTTGCTGCAGTTACAACGTGCGGCGCACAGCCTGAAAGGCGGCGCGCGTATGG
CTGAAATCGAGCCGGTGGCCGTGATTGCTTATCAGCTGGAAAATACCTTTGAACAGTTCGCGGTGCATCAGTTTAATTCC
AATGCTTATGATGCCTTGCTCAACACCACTGTGGCCTGGTTAAAAGAAGCCATCTTCCAGCGCGATTACAGTAACTTTGA
CAGCCTGAAAGCCAGCCTGGAGTCGATTGAATACGTCAATGCAACGGCGCAGTTGCCAGAACGCTTTAATACCGCCGATT
TGCTGGCGCCAAGCAAAACCTTCGAATTTGTGCAGGGTGATGGTGCCGAGCCGCCATCCATGCAGGGTGAATGGAGCGAA
ACCGCACAGCTGGATAACAGCAATGAGATGATCCGTATTTCGGCTGATCTGGTTGAGAAGATGATTGACCTGTCGGGTGA
AAACGCGATTAACCGCTCGCGAATCGAGATGGAGCTGGGTCAGCTGGGCGGTACCCTGAATGAAATGGAACTGGCGATTA
AACGTCTGGCCGATCAGTTACGCCGAATGGAAGGCGAGCTGGAAAGCCAGATTATTGCCAAACATGGCGATGAACATTCA
CGCTATACCGACTTCGACCCGCTGGAGATGGACCAGTATTCATCCTTGAACCAGCTGTCGAAATCGTTGGCGGAATCGGC
GTCGGACTTGGTGGACTTTAAGACCACGCTGGCGGACAAGATTCGTGATGCTGAAGGTCTGTTACTGCAACAATCGAGGA
TTCAGGCAGAAATTCAGGAAAGCCTGATGCGCACCCGCCTGGTACCGTTCTCACGCATGTTGCCACGTTTACAGCGGATT
GTGCGTCAGACTTCATCGACCTTAAACCGTCCTGCCGAGCTGGTGGTGCACAATACCGAAGGCGAACTAGACCGGACTAT
TCTGGAACGCCTGATTTCACCATTTGAACACATGCTGCGTAATGCGGTGGACCATGGTCTGGAAGATGCCGCTGTACGTA
AACAGGCAGCGAAGCCGGAAGTGGGCCAGATTGAGCTGAACATTGGCCGTCAGGGCACCGATGTACTGATTAGCTTTACC
GATGATGGTAAGGGGATTGATGAAACCAAGATTCACGCCAAAGCCCTGAGCCTTGGCCTGATTCAGCCAGAGCAACAGCT
GGACAAGAAAGAAATTCTGCAGCTGATTTTCCATCCGGGCTTTAGTACCGCACAAGCCGTGACCCAAATTTCGGGTCGTG
GCGTCGGGCTGGATGTGGTGCAAAGCGAAATTAAAGCACTGGGCGGCCATGTCGAGGTCGATTCTGAACTCGGTAAGGGC
ACCACCTTCAGTATTCGTGTACCGACCACAGTGGCGGTATCCGATGCCCTGATGGTAAAAGTCGGCGATCAGCAGTTTGC
AATTCCACTGGCGCAAATTGACCGTATTGTACGAATTTCACCTTCTGCGCTGGAAAGTTACTTCAGCAGCAAAGATGACT
ACTTCAAGATTGATCAGCAAAACTATAAGTTGCGCTATCTGTCCGAGTTTGTCGCCAATCAGCCATTGCCGCGTTTAAGC
AATATCGCGCATTCATTGCCGGTGCTGCTGATTAAAGGCAATACCGGTCAGACCATTGCCTTACTGGTCGATCAGCTGAT
TGGTTCGCGTGGCCAGATTGTGATGAAACCGATTGGCCAGCAGTTCTCCAGCGTGGGCTCGATTGCCGGCGCGACCATTC
TTGGTGATGGTCAGGTCTGTCTGATTCTGGATGGTCAGAATATTGCCCGTCAGATTCAGGCAACCCAGCGCATCAAGCAT
GTGATGGAGCCGCGTGAAGTACAGCGTCGTGATACCCGTCATCTGGTAATGATTGTGGATGACTCGGTGACCGTACGTAA
GGTCACGTCACGTCTGCTCGAGCGTCAGGGCTTTGATGTGGTCACAGCCAAAGACGGTGTCGATGCGATTGAGCAGCTTG
AAAATGTTAAACCGGATCTGATGCTGCTGGATATTGAAATGCCGCGTATGGACGGCTTTGAGGTGACCACCCTGGTACGC
CGCCATGACATCCATCGTGACTTGCCAATTATCATGATTACCTCGCGTACCGGTGAAAAACACCGTGAACGTGCCTTTAG
CTTGGGGGTAACGCACTATATGGGTAAACCGTTCCAGGAAGCAGAATTGCTTGCCAATATTGAAAACATTTTGCATAGCA
GTGAGGCTAAAGCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.998

100

0.62