Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABI424_RS05255 Genome accession   NZ_CP157211
Coordinates   1121836..1122486 (+) Length   216 a.a.
NCBI ID   WP_012340956.1    Uniprot ID   A0A9Q6YZQ0
Organism   Histophilus somni strain 23-038383_S91     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116836..1127486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS05255 (ABI424_001053) sxy/tfoX 1121836..1122486 (+) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator
  ABI424_RS05260 (ABI424_001054) - 1122921..1123013 (-) 93 WP_041604420.1 methionine/alanine import family NSS transporter small subunit -
  ABI424_RS05265 (ABI424_001055) - 1123016..1124524 (-) 1509 WP_011609857.1 sodium-dependent transporter -
  ABI424_RS05270 (ABI424_001056) lysA 1124788..1126041 (-) 1254 WP_012340955.1 diaminopimelate decarboxylase -
  ABI424_RS05275 (ABI424_001057) - 1126063..1126194 (-) 132 WP_012340954.1 lipoprotein -
  ABI424_RS05280 (ABI424_001058) cyaY 1126319..1126627 (+) 309 WP_012340953.1 iron donor protein CyaY -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24719.36 Da        Isoelectric Point: 10.5049

>NTDB_id=902918 ABI424_RS05255 WP_012340956.1 1121836..1122486(+) (sxy/tfoX) [Histophilus somni strain 23-038383_S91]
MTKSLKDTENIRSELTELIGTITVKNLFSGYGLFKKGLMFGLYQQGKFYIRAEKELAKYLESLGALSYLALTPNPQLNIG
NYYLLPKEITQNKEHFRQILYLSIAQTRAKKIAQELARKKRIKDLPNLSIKHERLLSKIHIKDIKSFKLKGAANCYIELK
LSGIPVNLILFWNLTAALLYKNVNVLTKTEKEQALKKLNKGLERAGLKPVEIILLQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=902918 ABI424_RS05255 WP_012340956.1 1121836..1122486(+) (sxy/tfoX) [Histophilus somni strain 23-038383_S91]
ATGACCAAATCATTAAAAGACACTGAAAATATTAGAAGTGAACTTACCGAATTGATAGGAACTATAACTGTGAAAAATCT
TTTTTCTGGTTATGGTTTATTTAAGAAAGGTCTTATGTTTGGTTTATACCAGCAAGGAAAATTTTATATTCGAGCAGAGA
AGGAATTAGCTAAATACCTAGAAAGCCTAGGTGCTTTATCATATTTAGCTTTAACCCCAAACCCTCAACTAAATATAGGA
AATTATTATCTATTGCCAAAAGAAATTACACAGAATAAGGAACATTTTCGTCAAATTCTCTATCTATCTATTGCTCAAAC
TAGAGCAAAGAAAATTGCACAAGAACTTGCTCGGAAAAAAAGAATAAAAGATCTCCCAAATCTTTCGATAAAACACGAAA
GGCTTCTTTCTAAAATACACATTAAAGATATAAAATCCTTTAAATTAAAAGGAGCAGCAAATTGCTACATAGAGTTAAAA
CTCTCAGGTATTCCTGTAAATCTCATTTTATTTTGGAATCTTACTGCCGCACTTTTATACAAGAATGTCAATGTATTGAC
TAAAACAGAAAAAGAACAGGCTTTAAAGAAACTTAATAAAGGTCTAGAGAGAGCAGGATTAAAACCTGTTGAGATTATAC
TTTTACAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(17-106)

TfoX C-terminal domain (TfoX_C)

(119-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YZQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

39.801

93.056

0.37