Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABH534_RS24155 Genome accession   NZ_CP157170
Coordinates   4806379..4807812 (+) Length   477 a.a.
NCBI ID   WP_347938119.1    Uniprot ID   -
Organism   Escherichia coli strain 99E2750     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4801379..4812812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH534_RS24125 (ABH534_24110) yrbG 4801937..4802914 (+) 978 WP_000922872.1 calcium/sodium antiporter -
  ABH534_RS24130 (ABH534_24115) kdsD 4802928..4803914 (+) 987 WP_001368728.1 arabinose-5-phosphate isomerase KdsD -
  ABH534_RS24135 (ABH534_24120) kdsC 4803935..4804501 (+) 567 WP_000030016.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ABH534_RS24140 (ABH534_24125) lptC 4804498..4805073 (+) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  ABH534_RS24145 (ABH534_24130) lptA 4805042..4805599 (+) 558 WP_000669785.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ABH534_RS24150 (ABH534_24135) lptB 4805606..4806331 (+) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  ABH534_RS24155 (ABH534_24140) rpoN/rpoN1 4806379..4807812 (+) 1434 WP_347938119.1 RNA polymerase factor sigma-54 Machinery gene
  ABH534_RS24160 (ABH534_24145) hpf 4807835..4808122 (+) 288 WP_001176599.1 ribosome hibernation promoting factor -
  ABH534_RS24165 (ABH534_24150) ptsN 4808240..4808731 (+) 492 WP_001299132.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABH534_RS24170 (ABH534_24155) rapZ 4808777..4809631 (+) 855 WP_000243741.1 RNase adapter RapZ -
  ABH534_RS24175 (ABH534_24160) npr 4809628..4809900 (+) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  ABH534_RS24180 (ABH534_24165) yrbL 4810114..4810746 (+) 633 WP_000620405.1 PhoP regulatory network protein YrbL -
  ABH534_RS24185 (ABH534_24170) mtgA 4810743..4811471 (-) 729 WP_000047091.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ABH534_RS24190 (ABH534_24175) elbB 4811468..4812121 (-) 654 WP_001299134.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54079.88 Da        Isoelectric Point: 4.3447

>NTDB_id=902869 ABH534_RS24155 WP_347938119.1 4806379..4807812(+) (rpoN/rpoN1) [Escherichia coli strain 99E2750]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDDDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEVSSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=902869 ABH534_RS24155 WP_347938119.1 4806379..4807812(+) (rpoN/rpoN1) [Escherichia coli strain 99E2750]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
TGAGCTGCCGGTCTATCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTCGAGCTGACACCGTTTT
CCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGACACCGGTTATCTGACTGTCCCGCTGGAAGAT
ATTCTCGAAAGTATGGGCGATGAAGAGATCGACATCGACGAGGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTAGCGGCAAAAGATCTGCGTGACTGCCTGCTAATCCAACTCTCCCAATTCGATAAAACCACGCCGTGGCTGG
AAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACTGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGATGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGTGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGTTTCCTCCACGGCGATTCGTGCACTGGTGAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTACTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.024

100

0.463