Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH534_RS15470 Genome accession   NZ_CP157170
Coordinates   3025562..3026191 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 99E2750     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020562..3031191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH534_RS15455 (ABH534_15445) helD 3020804..3022858 (-) 2055 WP_000420533.1 DNA helicase IV -
  ABH534_RS15460 (ABH534_15450) yccF 3022981..3023427 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ABH534_RS15465 (ABH534_15455) yccS 3023437..3025599 (+) 2163 WP_000875044.1 YccS family putative transporter -
  ABH534_RS15470 (ABH534_15460) sxy/tfoX 3025562..3026191 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH534_RS15475 (ABH534_15465) sulA 3026410..3026919 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH534_RS15480 (ABH534_15470) ompA 3027276..3028316 (+) 1041 WP_000750416.1 porin OmpA -
  ABH534_RS15485 (ABH534_15475) matP 3028392..3028844 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH534_RS15490 (ABH534_15480) ycbZ 3029030..3030790 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=902848 ABH534_RS15470 WP_000839153.1 3025562..3026191(-) (sxy/tfoX) [Escherichia coli strain 99E2750]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=902848 ABH534_RS15470 WP_000839153.1 3025562..3026191(-) (sxy/tfoX) [Escherichia coli strain 99E2750]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1