Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH549_RS18365 Genome accession   NZ_CP157165
Coordinates   3551843..3552472 (-) Length   209 a.a.
NCBI ID   WP_000839145.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546843..3557472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH549_RS18350 (ABH549_18340) helD 3547085..3549139 (-) 2055 WP_001397074.1 DNA helicase IV -
  ABH549_RS18355 (ABH549_18345) yccF 3549262..3549708 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABH549_RS18360 (ABH549_18350) yccS 3549718..3551880 (+) 2163 WP_074430347.1 YccS family putative transporter -
  ABH549_RS18365 (ABH549_18355) sxy/tfoX 3551843..3552472 (-) 630 WP_000839145.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH549_RS18370 (ABH549_18360) sulA 3552691..3553200 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH549_RS18375 (ABH549_18365) ompA 3553557..3554597 (+) 1041 WP_000750416.1 porin OmpA -
  ABH549_RS18380 (ABH549_18370) matP 3554673..3555125 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH549_RS18385 (ABH549_18375) ycbZ 3555311..3557071 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=902774 ABH549_RS18365 WP_000839145.1 3551843..3552472(-) (sxy/tfoX) [Escherichia coli strain UTAK-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRDRLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=902774 ABH549_RS18365 WP_000839145.1 3551843..3552472(-) (sxy/tfoX) [Escherichia coli strain UTAK-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGATAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGTCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995