Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH553_RS09390 Genome accession   NZ_CP157162
Coordinates   1963736..1964365 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTAK-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958736..1969365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH553_RS09370 (ABH553_09365) ycbZ 1959137..1960897 (-) 1761 WP_000156526.1 Lon protease family protein -
  ABH553_RS09375 (ABH553_09370) matP 1961083..1961535 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH553_RS09380 (ABH553_09375) ompA 1961611..1962651 (-) 1041 WP_000750416.1 porin OmpA -
  ABH553_RS09385 (ABH553_09380) sulA 1963008..1963517 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH553_RS09390 (ABH553_09385) sxy/tfoX 1963736..1964365 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH553_RS09395 (ABH553_09390) yccS 1964328..1966490 (-) 2163 WP_347941252.1 YccS family putative transporter -
  ABH553_RS09400 (ABH553_09395) yccF 1966500..1966946 (-) 447 WP_001261231.1 YccF domain-containing protein -
  ABH553_RS09405 (ABH553_09400) helD 1967069..1969123 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=902679 ABH553_RS09390 WP_000839153.1 1963736..1964365(+) (sxy/tfoX) [Escherichia coli strain UTAK-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=902679 ABH553_RS09390 WP_000839153.1 1963736..1964365(+) (sxy/tfoX) [Escherichia coli strain UTAK-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1