Detailed information NTG0902566

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SD235_RS16055
• Genome accession: NZ_CP138378
• Coordinates: 3384102..3385256 (+)
• Length: 384 a.a.
• NCBI ID: WP_021163045.1
• Uniprot ID: U2H1M2
• Organism: Burkholderia cepacia strain L303
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3379102..3390256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD235_RS16025 (SD235_16025)	-	3379744..3380349 (+)	606	WP_021163051.1	50S ribosomal protein L25/general stress protein Ctc	-
SD235_RS16030 (SD235_16030)	pth	3380470..3381069 (+)	600	WP_021163050.1	aminoacyl-tRNA hydrolase	-
SD235_RS16035 (SD235_16035)	hisC	3381184..3382251 (+)	1068	WP_021163049.1	histidinol-phosphate transaminase	-
SD235_RS16040 (SD235_16040)	-	3382336..3382602 (-)	267	WP_416268521.1	YfhL family 4Fe-4S dicluster ferredoxin	-
SD235_RS16045 (SD235_16045)	coaD	3382662..3383159 (-)	498	WP_021163047.1	pantetheine-phosphate adenylyltransferase	-
SD235_RS16050 (SD235_16050)	rsmD	3383271..3383885 (-)	615	WP_048025675.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
SD235_RS16055 (SD235_16055)	pilA	3384102..3385256 (+)	1155	WP_021163045.1	signal recognition particle-docking protein FtsY	Machinery gene
SD235_RS16060 (SD235_16060)	maiA	3385340..3385984 (-)	645	WP_059498604.1	maleylacetoacetate isomerase	-
SD235_RS16065 (SD235_16065)	ybiB	3386178..3387152 (+)	975	WP_416268522.1	DNA-binding protein YbiB	-
SD235_RS16070 (SD235_16070)	leuA	3387533..3389179 (+)	1647	WP_416269023.1	2-isopropylmalate synthase	-
SD235_RS16075 (SD235_16075)	-	3389320..3389703 (-)	384	WP_027789089.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40898.82 Da
• Isoelectric Point: 4.8018

>NTDB_id=902566 SD235_RS16055 WP_021163045.1 3384102..3385256(+) (pilA) [Burkholderia cepacia strain L303]
MFSFFKRFKKTQEPDPAESQSADAQQTDEPSDAPAVEAPPAAEVPQAPAQPAAPAVVMTVTPTNDGRDEVVETVEIVPPP
LQDATAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRAGRLTDPQQVKA
ALHDLLVELLTPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV
TVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1155 bp

>NTDB_id=902566 SD235_RS16055 WP_021163045.1 3384102..3385256(+) (pilA) [Burkholderia cepacia strain L303]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGATCCGGCGGAATCGCAATCGGCCGACGCGCAGCAAAC
GGACGAACCGTCCGATGCGCCCGCGGTCGAGGCTCCGCCTGCGGCCGAGGTGCCGCAAGCGCCGGCGCAGCCGGCCGCGC
CGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGGCGCGACGAAGTCGTCGAGACGGTCGAAATCGTTCCGCCGCCG
CTGCAGGACGCCACCGCGAAGAAATCGTGGCTCGCCCGCCTGAAAACGGGGCTCGCCAAGACGGGCTCGAGCATCACCGG
CGTCTTCGTCAACACGAAGATCGACGAGGATCTGTACGAGGAGCTCGAAACCGCGCTGCTGATGTCCGACGCGGGCGTCG
ACGCGACCGAGTACCTGCTCGGCGCGCTACGCGAAAAGGTGCGCGCGGGCCGCCTGACCGACCCGCAGCAGGTGAAGGCC
GCGCTGCACGACCTGCTCGTCGAGTTGCTGACGCCGCTCGAGAAGTCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGAT
GATGATCACCGGCGTGAACGGTGCGGGCAAGACGACCAGCATCGGCAAGCTCGCAAAGCATCTGCAGAGCTTCGACCAGT
CGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAACAACGTG
ACGGTCGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGA
CGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTCCACCTGATGGAAGAGCTGAAGAAGGTGAAGCGCGTGA
TCTCGAAGGCGCACGACGGCGCGCCGCACGAAGTGCTGCTGGTGATCGACGCGAACACCGGACAGAACGCGCTCACGCAG
GTCAAGGCATTCGACGACGCGCTCGGCCTCACCGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATTCT
CGCCGCGATCGCGCGGCAGCGCCCGGTGCCGGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCA
GCGCGGTCGAATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (102-164)

• SRP54-type protein, GTPase domain (SRP54) (185-384)

3D structure

• AlphaFold DB: U2H1M2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.846	100	0.583