Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   SD196_RS19290 Genome accession   NZ_CP138377
Coordinates   4219803..4222700 (-) Length   965 a.a.
NCBI ID   WP_416310564.1    Uniprot ID   -
Organism   Pseudomonas sp. W03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4214803..4227700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD196_RS19265 (SD196_19225) - 4215156..4215821 (-) 666 WP_370599818.1 SPOR domain-containing protein -
  SD196_RS19270 (SD196_19230) folC 4215840..4217126 (-) 1287 WP_416310562.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  SD196_RS19275 (SD196_19235) accD 4217123..4217998 (-) 876 WP_275610917.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  SD196_RS19280 (SD196_19240) - 4218245..4218868 (-) 624 WP_416310563.1 phosphoribosylanthranilate isomerase -
  SD196_RS19285 (SD196_19245) truA 4218926..4219783 (-) 858 WP_343572628.1 tRNA pseudouridine(38-40) synthase TruA -
  SD196_RS19290 (SD196_19250) fimV 4219803..4222700 (-) 2898 WP_416310564.1 FimV/HubP family polar landmark protein Machinery gene
  SD196_RS19295 (SD196_19255) - 4222870..4223877 (-) 1008 WP_416310565.1 aspartate-semialdehyde dehydrogenase -
  SD196_RS19300 (SD196_19260) - 4223979..4225178 (-) 1200 WP_416310566.1 FimV family protein -
  SD196_RS19305 (SD196_19265) asd 4225417..4226529 (-) 1113 WP_275610911.1 aspartate-semialdehyde dehydrogenase -
  SD196_RS19310 (SD196_19270) leuB 4226610..4227692 (-) 1083 WP_275610910.1 3-isopropylmalate dehydrogenase -

Sequence

Protein


Download         Length: 965 a.a.        Molecular weight: 101181.01 Da        Isoelectric Point: 3.9934

>NTDB_id=902543 SD196_RS19290 WP_416310564.1 4219803..4222700(-) (fimV) [Pseudomonas sp. W03]
MIRLRKLVQAIAAASALTTGMAHALGLGDIHLRSALNQPLDAEIDLVEVRDLAQGEVIPKLASPEDFNKAGVDRQYFLTG
LKFTPIIKPNGKSVIRVTSDRPVQEPYLNFLVEVLWPNGRLLREYTVLLDPPLYSPQTAAAAAPRAPMAAPAPISRQPAP
VAPRPAAAPSPRPAAAAAPAPRRLEGNEYRTGRNDTLWEIAARARPNSSVSVQQTMLAIQDLNPDAFLGGNINRLKSGQV
LRLPDAEQIKSRTQPDAAAEVTQQYTAWREGRSLPTGGARQLDATPRANAGAAPSQAEEKDSLRLVSGENGKAKGGDKGS
KDGKAIAEKLAVTQESLDTTRRENEELQSRMGDLKSQMDKLQKLIELKDAQLAKLQSQLGTAPQGAAQAPAADASAAAPT
APAPQPAVPDQPAAPAQPAPSAAPAQPSEPAAPVAPEASAPAAPETPAAPAAPAAPPAPAPEAAKPAEVKPAPAPAPAPV
EPVAESFIDEVLANPVWLGAIGGSAVLALLVLLMVISRRRAAKEREELDAASEADEHGLGGGFDLGDGDLDSLDVPQAAE
VAAPAASAPERVAAQTSDALGEADIYIAYGRFNQAAELLQGAIYDEPQRADLRLKLMEVYAEIGDRDGFTRQENELREMG
GADSQVEQLKSRYPGMVALTAVGAAGAAVAAADEFGGFSLDDLHLDSPAQPEPAAESAPLAGDLDDAFDLALDDLELEDD
KPAAPAESKADDLSLSTFDLDDDLAFDAPAAEPAKADDDFAFDLDLGAEPAAKPADVSLSDDLADFTLDLEKDAPSSPEE
DFLLGLDDDTTSLSGVSEQEFSLDKDHGVTQSLADLPDDFDLSLPGEEHEPVKADDSFSAQLDEVSAELDRLAGDVEEPK
APTPELEPEASFATNDLDAAGESAEEDDEFDFLSGADEAATKLDLARAYIDMGDTEGARDILDEVLAEGNDNQQQEAREL
LGRIA

Nucleotide


Download         Length: 2898 bp        

>NTDB_id=902543 SD196_RS19290 WP_416310564.1 4219803..4222700(-) (fimV) [Pseudomonas sp. W03]
ATGATCCGGCTTCGTAAACTGGTGCAGGCAATCGCGGCTGCTTCGGCATTGACCACGGGCATGGCGCATGCACTGGGGTT
GGGAGACATCCACCTGCGTTCAGCCCTGAACCAGCCGCTGGATGCCGAGATCGACCTGGTCGAAGTTCGTGATCTTGCCC
AGGGCGAGGTAATCCCCAAGCTGGCGTCGCCGGAAGACTTCAACAAGGCGGGCGTCGACCGCCAGTACTTCCTCACTGGC
CTGAAGTTCACCCCGATCATCAAGCCGAACGGCAAGAGCGTCATTCGCGTGACCTCGGATCGTCCGGTCCAGGAGCCCTA
CCTGAACTTCCTGGTCGAGGTGCTCTGGCCCAATGGCCGCCTGCTGCGCGAATACACCGTGCTGCTCGACCCGCCGCTGT
ACTCCCCGCAGACCGCCGCAGCCGCCGCGCCTCGCGCACCCATGGCCGCGCCGGCACCGATTTCCCGCCAGCCTGCTCCG
GTCGCGCCGCGTCCGGCCGCTGCGCCGTCCCCGCGTCCTGCTGCGGCAGCGGCGCCGGCTCCGCGCCGCCTGGAGGGCAA
CGAATACCGTACCGGCCGCAATGACACCCTGTGGGAAATCGCAGCGCGTGCGCGTCCGAACAGCAGTGTTTCAGTCCAGC
AGACCATGCTGGCGATCCAGGACCTCAATCCCGACGCCTTTCTCGGCGGCAACATCAACCGTCTGAAGAGCGGCCAGGTG
CTGCGCCTGCCGGATGCGGAGCAGATCAAGTCCCGCACGCAGCCTGACGCGGCCGCCGAAGTCACTCAGCAATACACCGC
CTGGCGCGAAGGGCGCAGCCTGCCGACTGGCGGTGCCCGTCAGCTGGACGCCACGCCGCGCGCCAACGCTGGCGCCGCTC
CTTCGCAAGCCGAGGAGAAGGACAGTCTGCGCCTGGTCTCCGGCGAAAACGGCAAGGCCAAGGGTGGCGACAAGGGCAGC
AAGGATGGCAAGGCCATTGCCGAGAAGCTCGCCGTTACCCAGGAAAGCCTGGATACCACCCGCCGCGAGAACGAAGAACT
GCAGAGTCGTATGGGCGACCTGAAAAGCCAGATGGACAAGCTGCAGAAGCTCATCGAGCTGAAGGATGCCCAGTTGGCGA
AGCTGCAGAGCCAGCTCGGTACTGCGCCGCAAGGCGCAGCCCAGGCGCCGGCGGCGGATGCGTCCGCTGCTGCTCCTACT
GCTCCCGCTCCTCAGCCTGCAGTGCCTGATCAACCTGCCGCTCCGGCCCAGCCCGCTCCGTCCGCTGCACCCGCTCAACC
GAGCGAGCCGGCGGCGCCCGTCGCGCCTGAGGCCAGTGCGCCGGCCGCTCCGGAGACTCCGGCAGCGCCTGCTGCTCCGG
CTGCACCGCCGGCTCCGGCCCCCGAGGCCGCCAAGCCGGCTGAGGTGAAACCGGCTCCGGCTCCCGCACCGGCTCCTGTC
GAGCCCGTCGCGGAGAGCTTCATCGATGAAGTCCTGGCCAACCCGGTCTGGCTGGGCGCTATCGGCGGTAGCGCCGTGCT
GGCGCTGCTGGTGCTGTTGATGGTGATTTCGCGCCGTCGGGCCGCCAAGGAGCGCGAGGAACTGGATGCCGCGTCCGAGG
CGGACGAGCATGGCCTGGGCGGTGGTTTTGACCTGGGTGATGGTGATCTGGACTCCCTCGACGTTCCGCAGGCTGCCGAA
GTGGCCGCTCCGGCGGCGTCGGCGCCCGAGCGTGTCGCTGCACAGACCAGCGATGCCTTGGGCGAGGCGGATATCTACAT
TGCCTACGGTCGCTTCAACCAGGCTGCCGAACTCCTGCAGGGCGCCATCTACGACGAGCCGCAGCGCGCCGACCTGCGTC
TCAAGCTGATGGAGGTGTATGCCGAGATCGGTGATCGTGATGGCTTCACCCGTCAGGAAAACGAACTGCGTGAGATGGGC
GGCGCCGACAGCCAGGTCGAGCAGTTGAAGTCTCGTTATCCGGGCATGGTTGCTCTGACTGCCGTGGGTGCGGCGGGCGC
CGCCGTGGCGGCTGCTGACGAGTTCGGCGGCTTCAGCCTGGATGACCTGCATCTGGATTCGCCGGCCCAGCCGGAACCTG
CCGCCGAATCGGCTCCTCTGGCGGGGGATCTCGACGACGCCTTCGACCTGGCGCTGGATGATCTCGAGCTGGAAGACGAC
AAGCCTGCGGCGCCGGCCGAGAGCAAGGCCGACGACCTGTCGCTGAGCACCTTCGACCTGGACGACGACCTGGCATTCGA
CGCACCTGCCGCTGAGCCGGCCAAGGCGGACGACGACTTCGCCTTCGACCTCGACCTGGGGGCGGAGCCTGCCGCCAAGC
CTGCGGACGTATCGCTGTCCGATGACCTGGCAGACTTTACCCTCGATCTGGAGAAGGACGCTCCGTCGTCCCCGGAAGAG
GACTTCCTGTTGGGTCTGGACGATGACACCACCTCGCTGTCCGGTGTCAGTGAGCAGGAATTCTCCCTCGACAAGGATCA
TGGCGTGACGCAGTCCCTGGCCGACCTGCCGGATGACTTCGATCTCTCCCTGCCTGGCGAGGAGCACGAACCGGTCAAGG
CTGACGACAGCTTCTCCGCCCAGCTCGACGAGGTGAGTGCGGAACTGGATCGTCTGGCTGGCGACGTCGAGGAGCCCAAG
GCGCCGACGCCGGAGCTGGAGCCGGAAGCGAGCTTCGCGACGAATGATCTCGACGCTGCCGGCGAAAGTGCGGAGGAGGA
TGACGAGTTCGACTTCCTCTCCGGCGCCGATGAAGCCGCTACCAAACTCGACCTGGCGCGTGCCTACATCGACATGGGCG
ACACCGAAGGCGCCCGCGACATCCTCGACGAAGTGCTCGCCGAGGGTAACGACAATCAGCAGCAGGAAGCGCGTGAACTG
CTCGGGCGCATCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

56.66

100

0.573