Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CTP10_RS09165 Genome accession   NZ_AP025170
Coordinates   1996799..1998160 (-) Length   453 a.a.
NCBI ID   WP_116320592.1    Uniprot ID   A0A388RNB6
Organism   Cupriavidus sp. P-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1991799..2003160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTP10_RS09145 (CTP10_R18320) - 1992312..1993277 (-) 966 WP_116320596.1 MurR/RpiR family transcriptional regulator -
  CTP10_RS09150 (CTP10_R18330) - 1993580..1995511 (+) 1932 WP_116320595.1 ATP-binding cassette domain-containing protein -
  CTP10_RS09155 (CTP10_R18340) - 1995578..1996063 (-) 486 WP_116320594.1 disulfide bond formation protein B -
  CTP10_RS09160 (CTP10_R18350) - 1996223..1996795 (-) 573 WP_116320593.1 GNAT family N-acetyltransferase -
  CTP10_RS09165 (CTP10_R18360) radA 1996799..1998160 (-) 1362 WP_116320592.1 DNA repair protein RadA Machinery gene
  CTP10_RS09170 (CTP10_R18370) alr 1998270..1999391 (-) 1122 WP_116320591.1 alanine racemase -
  CTP10_RS09175 (CTP10_R18380) lplT 2000026..2001345 (+) 1320 WP_116320590.1 lysophospholipid transporter LplT -
  CTP10_RS09180 (CTP10_R18390) - 2001370..2002545 (-) 1176 WP_116320589.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48339.74 Da        Isoelectric Point: 7.2700

>NTDB_id=90249 CTP10_RS09165 WP_116320592.1 1996799..1998160(-) (radA) [Cupriavidus sp. P-10]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAETAASKRFQPLAASAMVRKLSEIDAADVPRFSSGIDEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPALGLLAEIQLEKIQATLEA
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSHHEETVPGSCVLVTQEGSRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=90249 CTP10_RS09165 WP_116320592.1 1996799..1998160(-) (radA) [Cupriavidus sp. P-10]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGCGGCGGTACCACGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTGGAAACGGTGGCCGAGACGGCCGCTTCCAAGCGCTTCCAGCCGCTGGCTGCGTCGGCCA
TGGTGCGCAAGCTGTCGGAGATCGACGCCGCCGACGTGCCGCGCTTTTCCAGCGGCATCGACGAATTTGACCGCGTGCTG
GGCGGCGGGCTCGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCAGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCCAACCTGGCCGGACAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCGGGCGCGCAGATCGCCTTGCGTGCGC
AGCGGCTCGGCGTGGAGAGCCCGGCGCTGGGGCTGCTGGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTCGAAGCC
GAGAAGCCGGAAGTGGCGGTGATCGACTCGATCCAGACGCTGTACTCCGAGGCGCTGACCTCGGCACCGGGCTCGGTCGC
GCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCATCGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGATACGCAT
TCCTCGCACCGGCTGATCCGCGCTTTCAAGAACCGTTTTGGCGCGGTCAACGAACTGGGTGTGTTCGCCATGACCGAGCG
CGGGCTGCGTGGCATCAGCAACCCGTCGGCGCTGTTCCTGTCGCACCATGAAGAGACCGTGCCGGGCTCCTGCGTGCTGG
TGACTCAGGAGGGCTCGCGCCCGCTGCTGGTGGAGATCCAGGCACTGGTCGATACCGCGCACGTGCCCAACCCGCGCCGG
CTGGCGGTGGGCCTTGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATTGCCTGCTTTGA
CCAGGATGTGTTCCTGAATGCGGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTCTTTGGCGAAGTCGGCCTGGCGGGCGAAATCCGTCCC
AGTCCGCGAGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTCACGCTGGCCGTGATCCCCAAGGCGAATGCGCC
CAAGCAGAAGATCGACGGCCTGGAAGTGATCGCGGTGGAGCGCATCGAGCAGGCCATCGACCGCGTGCGCCACCTGGAGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A388RNB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.442

99.779

0.503
  radA Streptococcus pneumoniae Rx1

46.374

100

0.466
  radA Streptococcus pneumoniae D39

46.374

100

0.466
  radA Streptococcus pneumoniae R6

46.374

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.374

100

0.466
  radA Streptococcus mitis SK321

46.476

100

0.466
  radA Streptococcus mitis NCTC 12261

46.154

100

0.464

Multiple sequence alignment