Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SE337_RS09650 Genome accession   NZ_CP138374
Coordinates   1907174..1907851 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali pv. sesami strain DFR141     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902174..1912851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE337_RS09630 (SE337_09590) - 1902223..1902846 (+) 624 WP_004657835.1 glutathione S-transferase -
  SE337_RS09635 (SE337_09595) - 1903030..1903962 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  SE337_RS09640 (SE337_09600) - 1903959..1904747 (+) 789 WP_415915548.1 ABC transporter permease -
  SE337_RS09645 (SE337_09605) - 1904884..1907092 (+) 2209 Protein_1778 DNA internalization-related competence protein ComEC/Rec2 -
  SE337_RS09650 (SE337_09610) exbB 1907174..1907851 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SE337_RS09655 (SE337_09615) - 1907848..1908279 (+) 432 WP_002552677.1 ExbD/TolR family protein -
  SE337_RS09660 (SE337_09620) lpxK 1908279..1909274 (+) 996 WP_054077995.1 tetraacyldisaccharide 4'-kinase -
  SE337_RS09665 (SE337_09625) - 1909292..1909477 (+) 186 WP_002552679.1 Trm112 family protein -
  SE337_RS09670 (SE337_09630) kdsB 1909474..1910238 (+) 765 WP_054077996.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SE337_RS09675 (SE337_09635) murB 1910273..1911292 (+) 1020 WP_054077997.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=902487 SE337_RS09650 WP_002552676.1 1907174..1907851(+) (exbB) [Pseudomonas amygdali pv. sesami strain DFR141]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=902487 SE337_RS09650 WP_002552676.1 1907174..1907851(+) (exbB) [Pseudomonas amygdali pv. sesami strain DFR141]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACTGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738