Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABH552_RS17680 Genome accession   NZ_CP157152
Coordinates   3582651..3583256 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain UTAK-5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3577651..3588256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH552_RS17660 (ABH552_17655) aes 3577688..3578647 (+) 960 WP_000801832.1 acetyl esterase -
  ABH552_RS17665 (ABH552_17660) hemH 3578644..3579606 (-) 963 WP_001250097.1 ferrochelatase -
  ABH552_RS17670 (ABH552_17665) adk 3579842..3580486 (-) 645 WP_001220233.1 adenylate kinase -
  ABH552_RS17675 (ABH552_17670) htpG 3580667..3582541 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  ABH552_RS17680 (ABH552_17675) recR 3582651..3583256 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABH552_RS17685 (ABH552_17680) ybaB 3583256..3583585 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABH552_RS17690 (ABH552_17685) dnaX 3583638..3585569 (-) 1932 WP_000122018.1 DNA polymerase III subunit gamma/tau -
  ABH552_RS17695 (ABH552_17690) apt 3585698..3586249 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABH552_RS17700 (ABH552_17695) ybaN 3586402..3586779 (-) 378 WP_001188905.1 DUF454 family protein -
  ABH552_RS17705 (ABH552_17700) priC 3586849..3587376 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  ABH552_RS17710 (ABH552_17705) rsmS 3587390..3587551 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ABH552_RS17715 (ABH552_17710) - 3587604..3587702 (-) 99 Protein_3465 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=902469 ABH552_RS17680 WP_001195025.1 3582651..3583256(-) (recR) [Escherichia coli strain UTAK-5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=902469 ABH552_RS17680 WP_001195025.1 3582651..3583256(-) (recR) [Escherichia coli strain UTAK-5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443