Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CTP10_RS05245 Genome accession   NZ_AP025170
Coordinates   1128040..1130472 (+) Length   810 a.a.
NCBI ID   WP_116317631.1    Uniprot ID   A0A388RDK0
Organism   Cupriavidus sp. P-10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123040..1135472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTP10_RS05225 (CTP10_R10470) - 1123839..1124948 (-) 1110 WP_116317627.1 hypothetical protein -
  CTP10_RS05230 (CTP10_R10480) - 1125118..1126368 (+) 1251 WP_116317628.1 lipoprotein-releasing ABC transporter permease subunit -
  CTP10_RS05235 (CTP10_R10490) lolD 1126361..1127101 (+) 741 WP_116317629.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CTP10_RS05240 (CTP10_R10500) - 1127117..1127968 (+) 852 WP_116317630.1 TatD family hydrolase -
  CTP10_RS05245 (CTP10_R10510) comA 1128040..1130472 (+) 2433 WP_116317631.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CTP10_RS05250 (CTP10_R10520) - 1130469..1131419 (-) 951 WP_116317632.1 MurR/RpiR family transcriptional regulator -
  CTP10_RS05255 (CTP10_R10530) edd 1131679..1133574 (+) 1896 WP_116317633.1 phosphogluconate dehydratase -
  CTP10_RS05260 (CTP10_R10540) - 1133717..1134202 (+) 486 WP_116317634.1 gluconokinase -
  CTP10_RS05265 (CTP10_R10550) - 1134295..1134483 (-) 189 WP_116317635.1 hypothetical protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 85849.92 Da        Isoelectric Point: 10.6929

>NTDB_id=90245 CTP10_RS05245 WP_116317631.1 1128040..1130472(+) (comA) [Cupriavidus sp. P-10]
MRGFVVAFVAGCWVLQQQATLPRQDAVRMAAAGLALAGIAMLLCGTRLRAAWRGPILALLAFGAAFCWAAWRADIRLREW
LPASLESRDLDVQGVVSGLPSESAGGVRFAFAVEQTVPDGPDGPGLTLPGRLLLHWRDAPPGLYPGQRYALTVRLRRPRG
LANPFGFDYAYWLLAQGYGATGYVRRAQGPPQEATRERLGWRIEAWRAAVRDHLRAALPADARYGPVLIALVIGDQRGID
TEDWQLFRRTGISHLVSISGLHITMIAGMAGSLAGMLWRHSFGLGRRLRRPLPLWLPARHAALAAAVASALVYGLLAGMQ
IPALRTVAMLCVAAVAVWGARTPPASVVLAFAALVALLLDPWAVMSPGFWLSFGAVAVIFYAARSERGHAPKSRWQRSRA
TLAAAARTQWAVTAGLVPLTLLMFQQVSVVSPLANAVAIPVVSLLVTPLSLAAAAAPAMLAAPLLTVAHQAMVWLAALLG
WFSGLPWAMWEAPGSGPLPLLLAGLGIALLLAPPASAVVRLHGGLLVLPLVLARGPPVAHGEFRAVMLDVGQGTAVLVQM
RAHALLYDAGPGYASGASAGAQVVVPLLRGLGLGRIDHLMVSHEDADHAGGVADVEAAVAVAARSTGAPPGHALLGPAPS
GWAPCAAGQQWEWDGVHFTVLHPLPSQSQQAAIASNARSCVLHVASARHRLLLTGDIGVAEERALIDRLPPEALLADVMV
VAHHGSGTSSGAAWLEAVRPQAAVFQLGYANRYRHPRADVWERYGRAGIARYRADETGAVTLSTAPAGYTLSVFRQAEPR
YWRARAEAPR

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=90245 CTP10_RS05245 WP_116317631.1 1128040..1130472(+) (comA) [Cupriavidus sp. P-10]
GTGCGCGGGTTCGTGGTGGCGTTCGTCGCGGGATGCTGGGTGCTGCAGCAGCAGGCAACGCTGCCGCGGCAGGACGCCGT
GCGCATGGCCGCTGCCGGACTGGCGCTGGCGGGCATCGCCATGCTGCTGTGCGGCACGCGCCTGCGTGCCGCGTGGCGGG
GCCCGATACTGGCGCTCCTGGCCTTCGGCGCCGCGTTCTGCTGGGCGGCATGGCGCGCCGATATCCGCTTGCGGGAGTGG
TTGCCTGCTTCGCTTGAATCGCGCGACCTCGACGTGCAGGGTGTGGTTTCCGGGTTGCCGTCGGAATCAGCGGGCGGCGT
CCGCTTTGCCTTCGCCGTCGAGCAGACCGTGCCGGATGGTCCGGATGGGCCAGGGTTGACGTTGCCCGGCCGGCTCCTTC
TCCACTGGCGCGACGCGCCGCCTGGCCTGTATCCCGGCCAGCGCTACGCCCTGACCGTACGCTTGCGGCGCCCGCGTGGG
CTGGCCAATCCATTCGGCTTCGACTATGCCTACTGGCTGCTGGCGCAGGGCTATGGCGCGACGGGCTATGTACGGCGCGC
ACAGGGGCCACCGCAGGAGGCCACGCGGGAGCGGCTTGGATGGCGCATCGAGGCGTGGCGCGCGGCGGTGCGCGATCACC
TGCGCGCGGCGCTGCCGGCCGATGCGCGCTATGGCCCCGTGCTGATCGCGTTGGTGATCGGCGACCAGCGCGGCATCGAT
ACGGAAGACTGGCAGTTGTTCCGGCGTACCGGCATCAGTCACCTGGTCAGTATTTCAGGCTTGCACATCACCATGATTGC
CGGCATGGCGGGGTCGCTCGCGGGCATGTTATGGCGGCATTCATTCGGCCTGGGGCGCAGGCTGCGCCGGCCATTGCCGC
TATGGCTCCCGGCCAGGCACGCGGCGCTGGCGGCGGCGGTGGCCAGCGCGCTGGTGTATGGGCTGCTGGCTGGCATGCAG
ATCCCGGCATTGCGCACCGTGGCGATGCTGTGCGTGGCTGCGGTGGCGGTTTGGGGCGCGCGGACGCCGCCGGCCTCGGT
GGTGCTGGCCTTCGCTGCGCTGGTGGCGTTGCTGCTGGATCCATGGGCCGTGATGTCGCCGGGCTTCTGGCTGTCGTTCG
GCGCGGTGGCGGTGATCTTCTATGCTGCCCGGTCCGAACGCGGCCATGCGCCGAAAAGCCGCTGGCAACGCTCGCGTGCT
ACGCTTGCCGCCGCTGCGCGCACGCAATGGGCGGTGACAGCCGGACTGGTGCCGCTGACGCTGCTGATGTTCCAGCAGGT
GTCGGTGGTGTCGCCACTGGCCAATGCGGTCGCCATCCCGGTGGTCAGCCTGCTGGTGACGCCGCTGTCGCTGGCGGCCG
CCGCCGCGCCGGCGATGCTGGCCGCGCCGTTGCTGACCGTCGCGCACCAGGCGATGGTGTGGCTGGCGGCCCTGCTGGGC
TGGTTTTCCGGCCTGCCTTGGGCCATGTGGGAAGCGCCGGGCTCGGGCCCATTGCCTTTGCTGTTGGCCGGGCTCGGGAT
TGCGCTGTTGCTGGCGCCGCCGGCCAGCGCCGTGGTGCGCCTGCACGGCGGCCTGCTGGTGTTGCCGCTGGTATTGGCGC
GCGGGCCGCCGGTGGCGCACGGCGAGTTCCGCGCGGTGATGCTCGATGTGGGACAGGGAACCGCGGTGCTGGTGCAGATG
CGCGCGCATGCGCTGCTTTACGACGCGGGGCCTGGCTACGCATCGGGCGCCAGCGCCGGCGCGCAGGTAGTGGTGCCGCT
ACTGCGTGGCCTGGGTCTTGGTCGGATCGACCATCTGATGGTCAGCCATGAAGACGCCGACCATGCCGGCGGGGTGGCGG
ATGTGGAAGCGGCGGTGGCCGTAGCGGCGCGCAGTACCGGCGCGCCACCGGGTCATGCCTTGCTCGGGCCGGCACCATCC
GGCTGGGCGCCGTGCGCGGCCGGGCAGCAATGGGAATGGGACGGCGTGCATTTCACGGTGTTGCATCCGCTGCCATCGCA
ATCGCAACAGGCGGCGATCGCCAGCAATGCCCGCAGCTGCGTGCTGCACGTGGCGTCCGCGCGCCATCGCCTGCTGCTGA
CAGGCGATATTGGCGTGGCCGAGGAACGCGCGCTGATCGACAGGTTGCCGCCGGAGGCGCTGCTTGCCGACGTCATGGTG
GTGGCGCACCACGGCAGCGGCACGTCGTCCGGCGCCGCCTGGCTGGAAGCAGTGCGGCCCCAGGCGGCGGTATTCCAGCT
GGGCTATGCCAACCGGTACCGCCATCCGCGTGCCGATGTGTGGGAGCGCTACGGGCGCGCCGGCATCGCGCGCTACCGTG
CAGACGAAACCGGCGCGGTGACCTTGTCTACCGCGCCGGCGGGCTACACGCTGTCGGTCTTCCGGCAGGCCGAGCCGCGC
TACTGGCGCGCCCGGGCGGAGGCGCCGCGTTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-744)

Competence protein (Competence)

(231-512)

Domain of unknown function (DUF4131) (DUF4131)

(32-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A388RDK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.659

100

0.491

Multiple sequence alignment