Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SE933_RS09565 Genome accession   NZ_CP138370
Coordinates   1875456..1876265 (-) Length   269 a.a.
NCBI ID   WP_001289497.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR40     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870456..1881265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE933_RS09550 (SE933_09550) smc 1870677..1874215 (-) 3539 Protein_1809 chromosome segregation protein SMC -
  SE933_RS09555 (SE933_09555) rnc 1874223..1874909 (-) 687 WP_000661526.1 ribonuclease III -
  SE933_RS09560 (SE933_09560) - 1875085..1875453 (-) 369 WP_000719384.1 YbaN family protein -
  SE933_RS09565 (SE933_09565) vicX 1875456..1876265 (-) 810 WP_001289497.1 MBL fold metallo-hydrolase Regulator
  SE933_RS09570 (SE933_09570) vicK 1876269..1877618 (-) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SE933_RS09575 (SE933_09575) vicR 1877611..1878321 (-) 711 WP_000722052.1 response regulator YycF Regulator
  SE933_RS09580 (SE933_09580) - 1878661..1879416 (+) 756 WP_000053145.1 amino acid ABC transporter ATP-binding protein -
  SE933_RS09585 (SE933_09585) - 1879428..1880228 (+) 801 WP_000946165.1 transporter substrate-binding domain-containing protein -
  SE933_RS09590 (SE933_09590) - 1880241..1880936 (+) 696 WP_000173642.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30243.22 Da        Isoelectric Point: 6.2265

>NTDB_id=902417 SE933_RS09565 WP_001289497.1 1875456..1876265(-) (vicX) [Streptococcus agalactiae strain SagR40]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=902417 SE933_RS09565 WP_001289497.1 1875456..1876265(-) (vicX) [Streptococcus agalactiae strain SagR40]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAGGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766