Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK30_RS14935 Genome accession   NZ_AP027783
Coordinates   2988117..2988746 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain 2017-03-3CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983117..2993746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK30_RS14920 (VEE74_28750) helD 2983359..2985413 (-) 2055 WP_087898012.1 DNA helicase IV -
  AABK30_RS14925 (VEE74_28760) yccF 2985536..2985982 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABK30_RS14930 (VEE74_28770) yccS 2985992..2988154 (+) 2163 WP_023281787.1 YccS family putative transporter -
  AABK30_RS14935 (VEE74_28780) sxy/tfoX 2988117..2988746 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK30_RS14940 (VEE74_28790) sulA 2988965..2989474 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK30_RS14945 (VEE74_28810) ompA 2989831..2990871 (+) 1041 WP_000750416.1 porin OmpA -
  AABK30_RS14950 (VEE74_28820) matP 2990947..2991399 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK30_RS14955 (VEE74_28830) ycbZ 2991585..2993345 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=90236 AABK30_RS14935 WP_000839152.1 2988117..2988746(-) (sxy/tfoX) [Escherichia coli strain 2017-03-3CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=90236 AABK30_RS14935 WP_000839152.1 2988117..2988746(-) (sxy/tfoX) [Escherichia coli strain 2017-03-3CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment