Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SE858_RS08065 Genome accession   NZ_CP138368
Coordinates   1573292..1574101 (+) Length   269 a.a.
NCBI ID   WP_001289497.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR92     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568292..1579101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE858_RS08040 (SE858_08040) - 1568621..1569316 (-) 696 WP_000173642.1 amino acid ABC transporter permease -
  SE858_RS08045 (SE858_08045) - 1569329..1570129 (-) 801 WP_000946165.1 transporter substrate-binding domain-containing protein -
  SE858_RS08050 (SE858_08050) - 1570141..1570896 (-) 756 WP_000053145.1 amino acid ABC transporter ATP-binding protein -
  SE858_RS08055 (SE858_08055) vicR 1571236..1571946 (+) 711 WP_000722052.1 response regulator YycF Regulator
  SE858_RS08060 (SE858_08060) vicK 1571939..1573288 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SE858_RS08065 (SE858_08065) vicX 1573292..1574101 (+) 810 WP_001289497.1 MBL fold metallo-hydrolase Regulator
  SE858_RS08070 (SE858_08070) - 1574104..1574472 (+) 369 WP_000719384.1 YbaN family protein -
  SE858_RS08075 (SE858_08075) rnc 1574648..1575334 (+) 687 WP_000661526.1 ribonuclease III -
  SE858_RS08080 (SE858_08080) smc 1575342..1578880 (+) 3539 Protein_1519 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30243.22 Da        Isoelectric Point: 6.2265

>NTDB_id=902313 SE858_RS08065 WP_001289497.1 1573292..1574101(+) (vicX) [Streptococcus agalactiae strain SagR92]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=902313 SE858_RS08065 WP_001289497.1 1573292..1574101(+) (vicX) [Streptococcus agalactiae strain SagR92]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAGGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766