Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH542_RS14680 Genome accession   NZ_CP157132
Coordinates   2970825..2971454 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTAK-18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2965825..2976454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH542_RS14665 (ABH542_14650) helD 2966066..2968120 (-) 2055 WP_000420536.1 DNA helicase IV -
  ABH542_RS14670 (ABH542_14655) yccF 2968243..2968689 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABH542_RS14675 (ABH542_14660) yccS 2968699..2970862 (+) 2164 Protein_2877 YccS family putative transporter -
  ABH542_RS14680 (ABH542_14665) sxy/tfoX 2970825..2971454 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH542_RS14685 (ABH542_14670) sulA 2971673..2972182 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH542_RS14690 (ABH542_14675) ompA 2972539..2973591 (+) 1053 WP_000750419.1 porin OmpA -
  ABH542_RS14695 (ABH542_14680) matP 2973667..2974119 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH542_RS14700 (ABH542_14685) ycbZ 2974305..2976065 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=902307 ABH542_RS14680 WP_000839153.1 2970825..2971454(-) (sxy/tfoX) [Escherichia coli strain UTAK-18]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=902307 ABH542_RS14680 WP_000839153.1 2970825..2971454(-) (sxy/tfoX) [Escherichia coli strain UTAK-18]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1