Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   SE858_RS06305 Genome accession   NZ_CP138368
Coordinates   1228114..1228839 (+) Length   241 a.a.
NCBI ID   WP_000912307.1    Uniprot ID   A0AAV3JGZ9
Organism   Streptococcus agalactiae strain SagR92     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1223114..1233839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE858_RS06270 (SE858_06270) tsaE 1223917..1224360 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SE858_RS06275 (SE858_06275) - 1224353..1224874 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  SE858_RS06280 (SE858_06280) brpA 1224883..1226190 (+) 1308 WP_000708156.1 biofilm formation/cell division transcriptional regulator BrpA -
  SE858_RS06285 (SE858_06285) - 1226254..1226550 (-) 297 WP_000690175.1 hypothetical protein -
  SE858_RS06290 (SE858_06290) - 1226547..1226966 (-) 420 WP_000368097.1 HIT family protein -
  SE858_RS06295 (SE858_06295) - 1227302..1227805 (+) 504 WP_000773453.1 hypothetical protein -
  SE858_RS06300 (SE858_06300) - 1227857..1228042 (-) 186 WP_000368100.1 hypothetical protein -
  SE858_RS06305 (SE858_06305) pptA 1228114..1228839 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  SE858_RS06310 (SE858_06310) pptB 1228841..1229875 (+) 1035 WP_000732713.1 ABC transporter permease Regulator
  SE858_RS06315 (SE858_06315) ccrZ 1229933..1230733 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  SE858_RS06320 (SE858_06320) trmB 1230723..1231358 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SE858_RS06330 (SE858_06330) rimP 1231848..1232324 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  SE858_RS06335 (SE858_06335) nusA 1232360..1233511 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  SE858_RS06340 (SE858_06340) rnpM 1233533..1233829 (+) 297 WP_001140526.1 RNase P modulator RnpM -

Sequence


Protein


Download         Length: 241 a.a.        Molecular weight: 26835.26 Da        Isoelectric Point: 4.5704

>NTDB_id=902304 SE858_RS06305 WP_000912307.1 1228114..1228839(+) (pptA) [Streptococcus agalactiae strain SagR92]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=902304 SE858_RS06305 WP_000912307.1 1228114..1228839(+) (pptA) [Streptococcus agalactiae strain SagR92]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAGCTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains


Predicted by InterproScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.824

99.17

0.772

  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768