Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SE117_RS07215 Genome accession   NZ_CP138363
Coordinates   1532935..1533381 (-) Length   148 a.a.
NCBI ID   WP_319097229.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15V8707     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527935..1538381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE117_RS07185 (SE117_07185) gcvPA 1528862..1530208 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SE117_RS07190 (SE117_07190) gcvT 1530228..1531319 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  SE117_RS07195 (SE117_07195) - 1531477..1532001 (-) 525 WP_001015120.1 shikimate kinase -
  SE117_RS07200 (SE117_07200) - 1531991..1532137 (-) 147 WP_001789879.1 hypothetical protein -
  SE117_RS07205 (SE117_07205) comGF 1532234..1532731 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  SE117_RS07210 (SE117_07210) comGE 1532649..1532948 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  SE117_RS07215 (SE117_07215) comGD 1532935..1533381 (-) 447 WP_319097229.1 competence type IV pilus minor pilin ComGD Machinery gene
  SE117_RS07220 (SE117_07220) comGC 1533359..1533670 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SE117_RS07225 (SE117_07225) comGB 1533684..1534754 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  SE117_RS07230 (SE117_07230) comGA 1534726..1535700 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SE117_RS07235 (SE117_07235) - 1535752..1536375 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SE117_RS07240 (SE117_07240) - 1536372..1536701 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SE117_RS07245 (SE117_07245) - 1536701..1537687 (-) 987 WP_000161315.1 ROK family glucokinase -
  SE117_RS07250 (SE117_07250) - 1537684..1537887 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17073.27 Da        Isoelectric Point: 10.4350

>NTDB_id=902201 SE117_RS07215 WP_319097229.1 1532935..1533381(-) (comGD) [Staphylococcus aureus strain 15V8707]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDGEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=902201 SE117_RS07215 WP_319097229.1 1532935..1533381(-) (comGD) [Staphylococcus aureus strain 15V8707]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGGTGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986