Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABH539_RS26310 Genome accession   NZ_CP157110
Coordinates   5242950..5243975 (+) Length   341 a.a.
NCBI ID   WP_332258553.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-9     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5237950..5248975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH539_RS26300 (ABH539_26345) rpmE 5240181..5240393 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ABH539_RS26305 (ABH539_26350) priA 5240596..5242794 (+) 2199 WP_001341957.1 primosomal protein N' Machinery gene
  ABH539_RS26310 (ABH539_26355) cytR 5242950..5243975 (+) 1026 WP_332258553.1 DNA-binding transcriptional regulator CytR Regulator
  ABH539_RS26315 (ABH539_26360) ftsN 5244067..5245026 (+) 960 WP_000068834.1 cell division protein FtsN -
  ABH539_RS26320 (ABH539_26365) hslV 5245119..5245649 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ABH539_RS26325 (ABH539_26370) hslU 5245659..5246990 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  ABH539_RS26330 (ABH539_26375) menA 5247057..5247983 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABH539_RS26335 (ABH539_26380) rraA 5248076..5248561 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ABH539_RS26340 (ABH539_26385) zapB 5248646..5248891 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37891.85 Da        Isoelectric Point: 6.1637

>NTDB_id=902174 ABH539_RS26310 WP_332258553.1 5242950..5243975(+) (cytR) [Escherichia coli strain UTME-9]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQELKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=902174 ABH539_RS26310 WP_332258553.1 5242950..5243975(+) (cytR) [Escherichia coli strain UTME-9]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGAGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625