Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK30_RS05440 Genome accession   NZ_AP027783
Coordinates   1109391..1109906 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2017-03-3CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104391..1114906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK30_RS05395 (VEE74_10440) csrA 1104843..1105028 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK30_RS05425 (VEE74_10450) yqaB 1106621..1107187 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK30_RS05430 (VEE74_10460) yqaA 1107184..1107612 (+) 429 WP_001287457.1 YqaA family protein -
  AABK30_RS05435 (VEE74_10470) gshA 1107685..1109241 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK30_RS05440 (VEE74_10480) luxS 1109391..1109906 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AABK30_RS05445 (VEE74_10490) emrB 1109970..1111508 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK30_RS05450 (VEE74_10500) emrA 1111525..1112697 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK30_RS05455 (VEE74_10510) emrR 1112824..1113354 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK30_RS05460 (VEE74_10520) ygaH 1113445..1113780 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK30_RS05465 (VEE74_10530) ygaZ 1113770..1114507 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=90215 AABK30_RS05440 WP_001130207.1 1109391..1109906(+) (luxS) [Escherichia coli strain 2017-03-3CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=90215 AABK30_RS05440 WP_001130207.1 1109391..1109906(+) (luxS) [Escherichia coli strain 2017-03-3CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731