Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SE087_RS08035 Genome accession   NZ_CP138360
Coordinates   1661607..1662293 (-) Length   228 a.a.
NCBI ID   WP_217175778.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1656607..1667293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS08015 (SE087_08015) rpsT 1657521..1657772 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SE087_RS08020 (SE087_08020) holA 1657817..1658791 (-) 975 WP_001282559.1 DNA polymerase III subunit delta -
  SE087_RS08025 (SE087_08025) comEC 1658848..1661049 (-) 2202 WP_319078814.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SE087_RS08030 (SE087_08030) - 1661054..1661515 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SE087_RS08035 (SE087_08035) comEA 1661607..1662293 (-) 687 WP_217175778.1 helix-hairpin-helix domain-containing protein Machinery gene
  SE087_RS08040 (SE087_08040) - 1662333..1663049 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  SE087_RS08045 (SE087_08045) rsfS 1663052..1663405 (-) 354 WP_001088020.1 ribosome silencing factor -
  SE087_RS08050 (SE087_08050) yqeK 1663406..1663990 (-) 585 WP_217175779.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SE087_RS08055 (SE087_08055) nadD 1663980..1664549 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SE087_RS08060 (SE087_08060) yhbY 1664552..1664842 (-) 291 WP_000955233.1 ribosome assembly RNA-binding protein YhbY -
  SE087_RS08065 (SE087_08065) aroE 1664846..1665652 (-) 807 WP_063651368.1 shikimate dehydrogenase -
  SE087_RS08070 (SE087_08070) yqeH 1665666..1666766 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25723.50 Da        Isoelectric Point: 9.5413

>NTDB_id=902125 SE087_RS08035 WP_217175778.1 1661607..1662293(-) (comEA) [Staphylococcus aureus strain 17CS1042]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNFK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQVGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=902125 SE087_RS08035 WP_217175778.1 1661607..1662293(-) (comEA) [Staphylococcus aureus strain 17CS1042]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTTTAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAGTTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965