Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SDC30_RS28325 Genome accession   NZ_CP138357
Coordinates   6138449..6139939 (+) Length   496 a.a.
NCBI ID   WP_004575822.1    Uniprot ID   A0AAD2WB14
Organism   Pseudomonas putida strain NY11286     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6133449..6144939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC30_RS28305 (SDC30_28295) glnK 6134685..6135023 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  SDC30_RS28310 (SDC30_28300) - 6135543..6135809 (+) 267 WP_003253640.1 accessory factor UbiK family protein -
  SDC30_RS28315 (SDC30_28305) - 6135810..6136163 (+) 354 WP_270103269.1 gamma-glutamylcyclotransferase family protein -
  SDC30_RS28320 (SDC30_28310) - 6136117..6138186 (-) 2070 WP_082423805.1 DUF4034 domain-containing protein -
  SDC30_RS28325 (SDC30_28315) comM 6138449..6139939 (+) 1491 WP_004575822.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SDC30_RS28330 (SDC30_28320) - 6140007..6140375 (-) 369 WP_173881306.1 response regulator -
  SDC30_RS28335 (SDC30_28325) - 6140372..6141364 (-) 993 WP_060538710.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53045.04 Da        Isoelectric Point: 7.8840

>NTDB_id=902089 SDC30_RS28325 WP_004575822.1 6138449..6139939(+) (comM) [Pseudomonas putida strain NY11286]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCEKI
GRTHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=902089 SDC30_RS28325 WP_004575822.1 6138449..6139939(+) (comM) [Pseudomonas putida strain NY11286]
ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCATCCCCATCACTCTGCTTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGAAGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

54.291

100

0.548
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.482