Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SDC30_RS02705 Genome accession   NZ_CP138357
Coordinates   593247..593792 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain NY11286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 588247..598792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC30_RS02690 (SDC30_02695) bfr 588346..588810 (+) 465 WP_003255449.1 bacterioferritin -
  SDC30_RS02695 (SDC30_02700) uvrA 588879..591713 (-) 2835 WP_060538760.1 excinuclease ABC subunit UvrA -
  SDC30_RS02700 (SDC30_02705) - 591843..593237 (+) 1395 WP_003255447.1 MFS transporter -
  SDC30_RS02705 (SDC30_02710) ssb 593247..593792 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  SDC30_RS02710 (SDC30_02715) - 593883..595265 (-) 1383 WP_004576895.1 PLP-dependent aminotransferase family protein -
  SDC30_RS02715 (SDC30_02720) - 595466..596251 (+) 786 WP_047605319.1 TSUP family transporter -
  SDC30_RS02720 (SDC30_02725) - 596273..597034 (+) 762 WP_003255442.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=902069 SDC30_RS02705 WP_003255446.1 593247..593792(+) (ssb) [Pseudomonas putida strain NY11286]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=902069 SDC30_RS02705 WP_003255446.1 593247..593792(+) (ssb) [Pseudomonas putida strain NY11286]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492