Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SAY89_RS09720 Genome accession   NZ_CP138348
Coordinates   2311352..2311726 (-) Length   124 a.a.
NCBI ID   WP_041922412.1    Uniprot ID   A0A844GN83
Organism   Cyanobacterium aponinum AL20115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2306352..2316726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAY89_RS09710 (SAY89_09710) purL 2307186..2309465 (-) 2280 WP_320000841.1 phosphoribosylformylglycinamidine synthase subunit PurL -
  SAY89_RS09715 (SAY89_09715) trmFO 2309822..2311186 (-) 1365 WP_099436650.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SAY89_RS09720 (SAY89_09720) pilH 2311352..2311726 (-) 375 WP_041922412.1 PleD family two-component system response regulator Machinery gene
  SAY89_RS09725 (SAY89_09725) thiL 2311838..2312827 (-) 990 WP_320000842.1 thiamine-phosphate kinase -
  SAY89_RS09730 (SAY89_09730) - 2312898..2313425 (-) 528 WP_015218484.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14118.50 Da        Isoelectric Point: 6.7140

>NTDB_id=902059 SAY89_RS09720 WP_041922412.1 2311352..2311726(-) (pilH) [Cyanobacterium aponinum AL20115]
MIKILVVDDNHTPREVISEALKQFNIQVTEASNGVEATKIIEKEKFNLVITDVVMPEMNGYELCRWIKSNPGTEKVPVII
CSTKGEEFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNVG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=902059 SAY89_RS09720 WP_041922412.1 2311352..2311726(-) (pilH) [Cyanobacterium aponinum AL20115]
ATGATTAAAATTTTAGTAGTCGATGATAATCACACACCCAGAGAAGTGATCAGCGAAGCACTGAAACAGTTTAATATCCA
AGTAACCGAAGCATCCAATGGGGTAGAGGCAACCAAAATAATTGAGAAAGAAAAATTTAACCTCGTAATTACTGATGTAG
TGATGCCTGAAATGAATGGCTATGAATTATGTCGTTGGATAAAAAGTAATCCAGGAACAGAAAAAGTCCCTGTAATCATT
TGCTCTACAAAAGGAGAAGAATTTGATATTCACTGGGCAACAAAACAAGGGGCGGATGCTTATATTATTAAGCCTTTTAA
AACGATGGAATTATTAAAAACCATTAAATATTTACTTAAGCATAATGTAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.372

97.581

0.54