Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SC831_RS07190 Genome accession   NZ_CP138345
Coordinates   1433624..1435432 (-) Length   602 a.a.
NCBI ID   WP_004048226.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain XYW20210915001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428624..1440432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC831_RS07165 (SC831_07125) - 1429924..1430370 (-) 447 Protein_1360 magnesium transporter MgtE N-terminal domain-containing protein -
  SC831_RS07170 (SC831_07130) - 1430386..1431282 (-) 897 WP_004048222.1 RluA family pseudouridine synthase -
  SC831_RS07175 (SC831_07135) - 1431260..1432078 (-) 819 WP_004048223.1 NAD kinase -
  SC831_RS07180 (SC831_07140) - 1432115..1432744 (-) 630 WP_004048224.1 GTP pyrophosphokinase family protein -
  SC831_RS07185 (SC831_07145) - 1432949..1433578 (+) 630 WP_004048225.1 DsbA family protein -
  SC831_RS07190 (SC831_07150) pepF 1433624..1435432 (-) 1809 WP_004048226.1 oligoendopeptidase F Regulator
  SC831_RS07195 (SC831_07155) - 1435471..1436445 (-) 975 WP_004048227.1 competence protein CoiA -
  SC831_RS07200 (SC831_07160) - 1436537..1437286 (-) 750 WP_004048228.1 adaptor protein MecA -
  SC831_RS07205 (SC831_07165) spxA 1437421..1437819 (-) 399 WP_004048229.1 transcriptional regulator SpxA -
  SC831_RS07210 (SC831_07170) nrdG 1438176..1438853 (-) 678 WP_004048242.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68477.19 Da        Isoelectric Point: 4.6716

>NTDB_id=902016 SC831_RS07190 WP_004048226.1 1433624..1435432(-) (pepF) [Ligilactobacillus murinus strain XYW20210915001]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEEAFGQVVKAAEDFEQYKGTLENGAQAFLVALMEMLKLDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFQPELLALAPEKLASYYQAEPRLNTYKTLVNDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDGSGSKVELSNGVYGKLLEATERPVRREAFEQLYTVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNNIPVAVYDTLVKTVNENLELLHDYVALRKDILGVDELHMYDMYTPLTGEPTLTFT
YEQAKKMTLEALSVLGEEYIAYVEEAFAERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQNDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYSKLNQRYYGDAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLNYLKAG
SSAAPLEVMKKAGVDMTDSQYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=902016 SC831_RS07190 WP_004048226.1 1433624..1435432(-) (pepF) [Ligilactobacillus murinus strain XYW20210915001]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTGCCACTCGAGCTTACTTGGGATCTGACTAAGATCTTTGCGAC
TGATGCAGAATTTGAAGAAGCATTTGGGCAAGTTGTTAAAGCAGCTGAAGATTTTGAACAATACAAAGGAACATTAGAAA
ATGGGGCTCAAGCCTTTTTAGTTGCTCTAATGGAAATGCTTAAGTTGGATCGTCAACTTGAAGTAGTTTATGTCTATGCA
AGCATGAAAAATGATGAGGATACTGCTAATGCTAAGTACCAAGCTTTAATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCTAAATTAGCTTGGTTTCAGCCTGAATTATTAGCTTTAGCACCAGAAAAATTAGCAAGCTATTATCAAGCTGAGC
CTAGATTGAACACCTATAAAACATTAGTCAATGATTGGACTCGACTTCGCGCCCATGTCTTGAGTGAAAAAGAAGAAGCG
CTATTAGCAGGTGCAAGCGACATCTTAGGCGCTTCGGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTTCC
CGTAGTAACTGATGGATCGGGTTCAAAAGTCGAGCTTTCAAATGGAGTCTACGGTAAATTGCTCGAAGCGACCGAGCGCC
CAGTTAGACGTGAGGCATTCGAACAGTTATACACTGTGTATAAGCAGTTCAGACATACGTTTGCGGCTACCCTGTCTGCG
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCACTAGCCCAAAATAATAT
TCCAGTAGCTGTTTATGATACTTTAGTTAAAACAGTCAATGAAAATTTGGAGCTACTGCATGATTATGTAGCTTTACGTA
AGGATATCTTAGGGGTCGATGAGTTGCATATGTATGATATGTATACTCCCTTGACTGGTGAGCCGACATTGACGTTTACT
TATGAGCAGGCTAAAAAGATGACCTTAGAAGCTTTGAGCGTCTTAGGCGAAGAATATATTGCTTATGTAGAGGAGGCTTT
TGCTGAACGGTGGATCGATGTTGTTGCTAATGCAGGTAAGCGTTCGGGGGCCTATTCGGGTGGGGCCTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGCTAGATAATCTCTTTACATTAGTCCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGGGATTATTCGATCTTTGTTGCTGAGATCGCATCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGCTAGAGACCCAGAATGATCCTAAGGTACGGGCTTACGTATTGAATCACTATTTAGATG
GCTTTAAGGGAACCGTTTATCGGCAAACACAATTTGCTGAATTTGAAGCTTGGATCCATGAGCAAGATGCGTCACAAGTG
CCATTAACAGCAGATCTGATGTCAGATTTTTACAGTAAATTAAATCAACGCTACTATGGTGATGCAGTTGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTCTACTATAATTTCTATGTCTATCAATATGCAACTGGTTTTGGTG
CGGCCTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAGCCTGCGCACACTGAAGCTTATTTGAACTACTTAAAAGCAGGT
AGTTCAGCGGCTCCATTAGAAGTAATGAAAAAAGCTGGTGTCGATATGACTGATAGTCAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGTTTGGCTGAATTAAAAGAGCTATTAGCTAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.626

98.505

0.528