Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SC831_RS05090 Genome accession   NZ_CP138345
Coordinates   1005663..1007342 (+) Length   559 a.a.
NCBI ID   WP_004047607.1    Uniprot ID   A0A4Q2AVC7
Organism   Ligilactobacillus murinus strain XYW20210915001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1000663..1012342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC831_RS05060 (SC831_05035) folD 1000885..1001733 (+) 849 WP_004047596.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  SC831_RS05065 (SC831_05040) xseA 1001733..1003076 (+) 1344 WP_004047598.1 exodeoxyribonuclease VII large subunit -
  SC831_RS05070 (SC831_05045) - 1003073..1003300 (+) 228 WP_004047599.1 exodeoxyribonuclease VII small subunit -
  SC831_RS05075 (SC831_05050) - 1003405..1004283 (+) 879 WP_004047601.1 polyprenyl synthetase family protein -
  SC831_RS05080 (SC831_05055) - 1004298..1005125 (+) 828 WP_004047602.1 TlyA family RNA methyltransferase -
  SC831_RS05085 (SC831_05060) - 1005146..1005604 (+) 459 WP_004047604.1 arginine repressor -
  SC831_RS05090 (SC831_05065) recN 1005663..1007342 (+) 1680 WP_004047607.1 DNA repair protein RecN Machinery gene
  SC831_RS05095 (SC831_05070) lexA 1007431..1008054 (-) 624 WP_004047608.1 transcriptional repressor LexA -
  SC831_RS05100 (SC831_05075) - 1008218..1008514 (+) 297 WP_004047610.1 DUF896 domain-containing protein -
  SC831_RS05105 (SC831_05080) - 1008595..1008819 (+) 225 WP_004047611.1 YneF family protein -
  SC831_RS05110 (SC831_05085) - 1008868..1009494 (-) 627 WP_004047612.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SC831_RS05115 (SC831_05090) - 1009661..1010458 (+) 798 WP_081610229.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SC831_RS05120 (SC831_05095) - 1010442..1010729 (+) 288 WP_004047616.1 GIY-YIG nuclease family protein -
  SC831_RS05125 (SC831_05100) - 1010871..1011866 (+) 996 WP_039936065.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63074.34 Da        Isoelectric Point: 4.5690

>NTDB_id=902011 SC831_RS05090 WP_004047607.1 1005663..1007342(+) (recN) [Ligilactobacillus murinus strain XYW20210915001]
MLQELMIRDFAIIDQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDILILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQILYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELAAIYEKVSDAFYNLQDVAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHSKAKKLALEISELRKETAKRLEAEIHQQLSALYMDKAVFEVRFLP
ANGQLTETGLDRVEFYIQTNPGEEMGALARIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKEGK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=902011 SC831_RS05090 WP_004047607.1 1005663..1007342(+) (recN) [Ligilactobacillus murinus strain XYW20210915001]
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGATCAGTTGACCGTCGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACTGGGGCTGGTAAGTCCATCATTATTGATGCTTTAGGTCTACTAGCAGGTGGACGCGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAATCATTGCTCCAAGGACAATTTACTATCCCTAAAGCAACTCGAACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGATATTTTGATCTTACAACGCGATATTTATCGCAGTGGCAAAAATGTTTGCCG
AATAAATGGCGTTTTGGTCAATCTAGGTACACTTCGGCAGGTGGGGCAAACATTGATCGATATCCATGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGTCATTTAGCTCTAGTCGATAATTATCAGCCTGAGATCTTAGCTAAATTAGCACAA
TATCAGATACTTTATGCCAATTATCGTCGTCTTTCTCAGGCACTAGAGCAACGTGAGAAAAATGCACATGAGTGGGCGCA
AAGACTTGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGCTACATGAGGGTGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCGTTAGAGATGAGTTATCAAGCACTGAATGGTGAAGAA
TTAGATGTGATGAGTGTTCTAGGAAATGTCATGAGTGAGTTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCTGCGAT
CTACGAAAAGGTCTCTGATGCTTTCTATAATCTACAAGATGTAGCGCATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAATTGTTAAATTCCATCGAAGCACGGCTTGAAACGATCCATCAACTCAAGCGTAAATATGGCGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGCGAACTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAGCAGGTCAAAGAAGCTCATAGCAAGGCAAAAAAATTAGCGTTAGAGATCAGTGAGTTGCGTAAAGAGACTGCTA
AACGGCTTGAAGCTGAGATCCATCAGCAGTTGAGTGCACTATATATGGATAAAGCTGTTTTTGAAGTGCGATTTTTACCG
GCGAATGGACAATTGACTGAAACTGGCCTTGATCGGGTCGAATTTTACATTCAAACTAATCCCGGAGAAGAAATGGGGGC
TTTAGCAAGGATCGCTTCTGGTGGTGAATTATCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCTCAAAATAAAGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGAGTCAGTGGACGTGTCGCACAAGCGATCGCTGAAAAGATCAGCCAG
ATCGCAACTAATTCGCAGGTGCTGTGTATCACCCACTTGCCACAGGTCGCGGCTGTGGCAGACCACCATTATTTTATTGC
TAAACATGTAGCCAATGGGCGGACTGAAACTTCGCTTACGATCTTAAATGATAAAGAACGGATCGAAGAACTAGCCCGGA
TGCTGTCAGGTTCTTCGATCACGACTTTGACACTAGAACATGCAGAAGAACTGCTAAAAATGGCTAAGGAAGGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q2AVC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.14

100

0.487