Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ABH547_RS16380 Genome accession   NZ_CP157095
Coordinates   3236028..3237455 (+) Length   475 a.a.
NCBI ID   WP_072097939.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3231028..3242455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH547_RS16350 (ABH547_16385) - 3231177..3231566 (+) 390 WP_096954432.1 transposase -
  ABH547_RS16355 (ABH547_16390) - 3231837..3232202 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  ABH547_RS16360 (ABH547_16395) tmaR 3232303..3232632 (-) 330 WP_000450409.1 DUF496 family protein -
  ABH547_RS16365 (ABH547_16400) yeeA 3232804..3233862 (-) 1059 WP_096957500.1 FUSC family protein -
  ABH547_RS16370 (ABH547_16405) sbmC 3234061..3234534 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  ABH547_RS16375 (ABH547_16410) dacD 3234653..3235819 (-) 1167 WP_064560214.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ABH547_RS16380 (ABH547_16415) sbcB 3236028..3237455 (+) 1428 WP_072097939.1 exodeoxyribonuclease I Machinery gene
  ABH547_RS16385 (ABH547_16420) tsuB 3237498..3237725 (-) 228 WP_044865608.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ABH547_RS16390 (ABH547_16425) tsuA 3237739..3238797 (-) 1059 WP_044865606.1 thiosulfate utilization transporter TsuA/YeeE -
  ABH547_RS16395 (ABH547_16430) plaP 3238976..3240334 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ABH547_RS16400 (ABH547_16435) yoeI 3240324..3240386 (-) 63 WP_010723108.1 membrane protein YoeI -
  ABH547_RS16405 (ABH547_16440) yeeY 3240601..3241530 (-) 930 WP_064560212.1 LysR substrate-binding domain-containing protein -
  ABH547_RS16410 (ABH547_16445) yeeZ 3241576..3242400 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=901981 ABH547_RS16380 WP_072097939.1 3236028..3237455(+) (sbcB) [Escherichia coli strain UTME-12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=901981 ABH547_RS16380 WP_072097939.1 3236028..3237455(+) (sbcB) [Escherichia coli strain UTME-12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTACCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579