Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH547_RS09225 Genome accession   NZ_CP157095
Coordinates   1895368..1895997 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTME-12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890368..1900997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH547_RS09205 (ABH547_09225) ycbZ 1890769..1892529 (-) 1761 WP_000156528.1 Lon protease family protein -
  ABH547_RS09210 (ABH547_09230) matP 1892715..1893167 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH547_RS09215 (ABH547_09235) ompA 1893243..1894283 (-) 1041 WP_000750416.1 porin OmpA -
  ABH547_RS09220 (ABH547_09240) sulA 1894640..1895149 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH547_RS09225 (ABH547_09245) sxy/tfoX 1895368..1895997 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH547_RS09230 (ABH547_09250) yccS 1895960..1898122 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ABH547_RS09235 (ABH547_09255) yccF 1898132..1898578 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ABH547_RS09240 (ABH547_09260) helD 1898701..1900755 (+) 2055 WP_064559378.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=901968 ABH547_RS09225 WP_000839153.1 1895368..1895997(+) (sxy/tfoX) [Escherichia coli strain UTME-12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=901968 ABH547_RS09225 WP_000839153.1 1895368..1895997(+) (sxy/tfoX) [Escherichia coli strain UTME-12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1