Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   SE147_RS02340 Genome accession   NZ_CP138342
Coordinates   450218..451147 (+) Length   309 a.a.
NCBI ID   WP_250328390.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH1713     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 445218..456147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE147_RS02315 (SE147_02315) - 445868..446377 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  SE147_RS02320 (SE147_02320) - 446607..447188 (-) 582 WP_033910016.1 superoxide dismutase -
  SE147_RS02325 (SE147_02325) dnaB 447352..448758 (+) 1407 WP_123771571.1 replicative DNA helicase -
  SE147_RS02330 (SE147_02330) pilH 448913..449578 (+) 666 WP_319078477.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SE147_RS02335 (SE147_02335) pilV 449610..450221 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Machinery gene
  SE147_RS02340 (SE147_02340) pilJ 450218..451147 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  SE147_RS02345 (SE147_02345) pilK 451126..451737 (+) 612 WP_123768185.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SE147_RS02350 (SE147_02350) pilL 451739..452212 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  SE147_RS02355 (SE147_02355) - 452282..452590 (-) 309 WP_025456241.1 AzlD family protein -
  SE147_RS02360 (SE147_02360) - 452587..453296 (-) 710 Protein_458 AzlC family ABC transporter permease -
  SE147_RS02365 (SE147_02365) dut 453462..453914 (+) 453 WP_003687923.1 dUTP diphosphatase -
  SE147_RS02370 (SE147_02370) dapC 453992..455179 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  SE147_RS02375 (SE147_02375) yaaA 455335..456114 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 309 a.a.        Molecular weight: 33921.87 Da        Isoelectric Point: 9.3367

>NTDB_id=901965 SE147_RS02340 WP_250328390.1 450218..451147(+) (pilJ) [Neisseria gonorrhoeae strain TH1713]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIKDVVVSDVPQKNYLFSLKKSNANKLIPIAESPNINYQNFFQVSSALIFQYGIDDVNASDATTVVSSCAAISK
PGKQIPTLEDAKKELKIVSQDKEQGNIARQRHVVNAYAVGKIAGEGGLFRFQLDDKGKWGNPQLLVKKVKRMKVRYIYVS
GCPEDEDVGKEEQFKYTDKFDGSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=901965 SE147_RS02340 WP_250328390.1 450218..451147(+) (pilJ) [Neisseria gonorrhoeae strain TH1713]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGCTTCAATATGTCTGAGCATATCAAAGATGTTGTTGTTTCCGATGTGCCGCAAAAAAACTATCTTTTTTCCTTAAAAAA
GAGCAATGCAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAATTATCAGAATTTTTTCCAGGTTAGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGACGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGAGCAAGGCAATAT
AGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGGAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAAACGTATGAAAGTGCGGTATATCTATGTTTCC
GGTTGTCCTGAAGATGAAGATGTCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACGGCTCTGTTACGCCTGC
CGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTTATGCTTACCGTA
TCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

90.735

100

0.919