Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SE147_RS02330 Genome accession   NZ_CP138342
Coordinates   448913..449578 (+) Length   221 a.a.
NCBI ID   WP_319078477.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH1713     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443913..454578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE147_RS02305 (SE147_02305) cysT 444201..445028 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  SE147_RS02310 (SE147_02310) - 445209..445541 (+) 333 WP_047926879.1 hypothetical protein -
  SE147_RS02315 (SE147_02315) - 445868..446377 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  SE147_RS02320 (SE147_02320) - 446607..447188 (-) 582 WP_033910016.1 superoxide dismutase -
  SE147_RS02325 (SE147_02325) dnaB 447352..448758 (+) 1407 WP_123771571.1 replicative DNA helicase -
  SE147_RS02330 (SE147_02330) pilH 448913..449578 (+) 666 WP_319078477.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SE147_RS02335 (SE147_02335) pilV 449610..450221 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Machinery gene
  SE147_RS02340 (SE147_02340) pilJ 450218..451147 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  SE147_RS02345 (SE147_02345) pilK 451126..451737 (+) 612 WP_123768185.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SE147_RS02350 (SE147_02350) pilL 451739..452212 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  SE147_RS02355 (SE147_02355) - 452282..452590 (-) 309 WP_025456241.1 AzlD family protein -
  SE147_RS02360 (SE147_02360) - 452587..453296 (-) 710 Protein_458 AzlC family ABC transporter permease -
  SE147_RS02365 (SE147_02365) dut 453462..453914 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24562.96 Da        Isoelectric Point: 8.3295

>NTDB_id=901963 SE147_RS02330 WP_319078477.1 448913..449578(+) (pilH) [Neisseria gonorrhoeae strain TH1713]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGDKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQYLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=901963 SE147_RS02330 WP_319078477.1 448913..449578(+) (pilH) [Neisseria gonorrhoeae strain TH1713]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCGATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGTATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.045

100

0.9