Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH544_RS15095 Genome accession   NZ_CP157093
Coordinates   3030466..3031095 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTME-13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3025466..3036095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH544_RS15080 (ABH544_15070) helD 3025707..3027761 (-) 2055 WP_000420536.1 DNA helicase IV -
  ABH544_RS15085 (ABH544_15075) yccF 3027884..3028330 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABH544_RS15090 (ABH544_15080) yccS 3028340..3030503 (+) 2164 Protein_2958 YccS family putative transporter -
  ABH544_RS15095 (ABH544_15085) sxy/tfoX 3030466..3031095 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH544_RS15100 (ABH544_15090) sulA 3031314..3031823 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH544_RS15105 (ABH544_15095) ompA 3032180..3033232 (+) 1053 WP_000750419.1 porin OmpA -
  ABH544_RS15110 (ABH544_15100) matP 3033308..3033760 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH544_RS15115 (ABH544_15105) ycbZ 3033946..3035706 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=901909 ABH544_RS15095 WP_000839153.1 3030466..3031095(-) (sxy/tfoX) [Escherichia coli strain UTME-13]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=901909 ABH544_RS15095 WP_000839153.1 3030466..3031095(-) (sxy/tfoX) [Escherichia coli strain UTME-13]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1