Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SE146_RS00490 Genome accession   NZ_CP138339
Coordinates   104524..105069 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH2288     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99524..110069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE146_RS00480 (SE146_00480) - 100530..101042 (-) 513 WP_003687349.1 shikimate kinase -
  SE146_RS00485 (SE146_00485) pilQ 102310..104505 (-) 2196 WP_003690569.1 type IV pilus secretin PilQ Machinery gene
  SE146_RS00490 (SE146_00490) pilP 104524..105069 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  SE146_RS00495 (SE146_00495) - 105087..105734 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  SE146_RS00500 (SE146_00500) pilN 105735..106334 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  SE146_RS00505 (SE146_00505) pilM 106337..107452 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  SE146_RS00510 (SE146_00510) - 107604..110000 (+) 2397 WP_003704910.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=901904 SE146_RS00490 WP_003687351.1 104524..105069(-) (pilP) [Neisseria gonorrhoeae strain TH2288]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=901904 SE146_RS00490 WP_003687351.1 104524..105069(-) (pilP) [Neisseria gonorrhoeae strain TH2288]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983