Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R8N76_RS13265 Genome accession   NZ_CP138336
Coordinates   2553659..2553943 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus ATCC 14579     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2548659..2558943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8N76_RS13250 (R8N76_13245) rnmV 2549485..2550042 (-) 558 WP_000692835.1 ribonuclease M5 -
  R8N76_RS13255 (R8N76_13250) - 2550257..2551024 (-) 768 WP_000895851.1 TatD family hydrolase -
  R8N76_RS13260 (R8N76_13255) metG 2551191..2553173 (-) 1983 WP_000134141.1 methionine--tRNA ligase -
  R8N76_RS13265 (R8N76_13260) abrB 2553659..2553943 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  R8N76_RS13270 (R8N76_13265) rsmI 2553964..2554839 (-) 876 WP_000267819.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  R8N76_RS13275 (R8N76_13270) - 2554808..2555098 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  R8N76_RS13280 (R8N76_13275) - 2555085..2555825 (-) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R8N76_RS13285 (R8N76_13280) yabA 2555908..2556258 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  R8N76_RS13290 (R8N76_13285) - 2556273..2557100 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  R8N76_RS13295 (R8N76_13290) holB 2557106..2558089 (-) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  R8N76_RS13300 (R8N76_13295) tmk 2558125..2558751 (-) 627 WP_000677216.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=901874 R8N76_RS13265 WP_000843036.1 2553659..2553943(+) (abrB) [Bacillus cereus ATCC 14579]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=901874 R8N76_RS13265 WP_000843036.1 2553659..2553943(+) (abrB) [Bacillus cereus ATCC 14579]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851