Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   R8N76_RS06940 Genome accession   NZ_CP138336
Coordinates   1336305..1336628 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus ATCC 14579     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331305..1341628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8N76_RS06925 (R8N76_06930) - 1331819..1333186 (-) 1368 WP_000028370.1 aldehyde dehydrogenase -
  R8N76_RS06930 (R8N76_06935) inhA1 1333358..1335748 (-) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  R8N76_RS06935 (R8N76_06940) - 1336091..1336225 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  R8N76_RS06940 (R8N76_06945) sinR 1336305..1336628 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  R8N76_RS06945 (R8N76_06950) calY 1336701..1337294 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  R8N76_RS06950 (R8N76_06955) - 1337681..1338505 (-) 825 WP_000919949.1 DUF4047 domain-containing protein -
  R8N76_RS06955 (R8N76_06960) - 1338636..1339223 (-) 588 WP_000172856.1 CalY family protein -
  R8N76_RS06960 (R8N76_06965) sipW 1339284..1339853 (-) 570 WP_000767792.1 signal peptidase I SipW -
  R8N76_RS06965 (R8N76_06970) - 1340044..1341330 (-) 1287 WP_000245996.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=901857 R8N76_RS06940 WP_000578885.1 1336305..1336628(+) (sinR) [Bacillus cereus ATCC 14579]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=901857 R8N76_RS06940 WP_000578885.1 1336305..1336628(+) (sinR) [Bacillus cereus ATCC 14579]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692