Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RQP18_RS12655 Genome accession   NZ_CP138333
Coordinates   2503761..2505134 (-) Length   457 a.a.
NCBI ID   WP_342388038.1    Uniprot ID   -
Organism   Salinicoccus sp. Bachu38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2498761..2510134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP18_RS12630 (RQP18_12570) cysE 2499166..2499822 (-) 657 WP_342388034.1 serine O-acetyltransferase -
  RQP18_RS12635 (RQP18_12575) gltX 2500078..2501532 (-) 1455 WP_342389414.1 glutamate--tRNA ligase -
  RQP18_RS12640 (RQP18_12580) ispF 2501532..2502014 (-) 483 WP_342388035.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RQP18_RS12645 (RQP18_12585) ispD 2502016..2502693 (-) 678 WP_342388036.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RQP18_RS12650 (RQP18_12590) - 2502690..2503745 (-) 1056 WP_342388037.1 PIN/TRAM domain-containing protein -
  RQP18_RS12655 (RQP18_12595) radA 2503761..2505134 (-) 1374 WP_342388038.1 DNA repair protein RadA Machinery gene
  RQP18_RS12660 (RQP18_12600) - 2505279..2507717 (-) 2439 WP_342388039.1 ATP-dependent Clp protease ATP-binding subunit -
  RQP18_RS12665 (RQP18_12605) - 2507719..2508783 (-) 1065 WP_342389415.1 protein arginine kinase -
  RQP18_RS12670 (RQP18_12610) - 2508737..2509255 (-) 519 WP_342388040.1 UvrB/UvrC motif-containing protein -
  RQP18_RS12675 (RQP18_12615) - 2509260..2509727 (-) 468 WP_031545967.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50382.69 Da        Isoelectric Point: 6.7219

>NTDB_id=901842 RQP18_RS12655 WP_342388038.1 2503761..2505134(-) (radA) [Salinicoccus sp. Bachu38]
MAKTKNIFECMACGHESPKWMGKCPNCGAWNQMEEKLVHKETKGRGTFGKPEAEGRQRSRKLERVNKSNTPRTLTQSGEF
DRVLGGGIVDGSLILIGGDPGIGKSTILLQTALTLSQNHEVLYVSGEESLEQIKLRADRLTEGSDRLNVYSETNLFYIHD
EIKQLDPDFLIIDSIQTIYNPDVTSAPGSVSQVRECTQSLMNIAKSGNVATFIVGHVTKEGQIAGPRMLEHMVDTVLYFE
GDQHHTYRMLRAVKNRFGSTNEMGMFEMKSEGLKEVLNPSEIFLEERSKNTPGSAIVATMEGTRALLVEVQALVTPTHFH
NPRRMATGIDQNRLSLLMAVLEKSEGLLMQQHDAYIKVAGGVRLDEPAVDLSVIVSIASSFKAAQVRGDDCFIGEVGLTG
EVRRVTKIEQRLQEAAKLGFNRAIIPASNMSGLEVPEGIEVISVRTLRDALKVAITK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=901842 RQP18_RS12655 WP_342388038.1 2503761..2505134(-) (radA) [Salinicoccus sp. Bachu38]
ATGGCAAAAACGAAAAATATTTTCGAGTGCATGGCATGCGGACATGAATCGCCCAAATGGATGGGCAAATGTCCAAACTG
CGGTGCATGGAACCAGATGGAAGAGAAGCTGGTTCATAAGGAGACGAAGGGCAGGGGAACATTCGGCAAGCCCGAAGCGG
AAGGCCGCCAGCGCAGCCGGAAGCTTGAACGTGTAAACAAGAGCAACACGCCGAGGACGCTGACGCAGAGCGGCGAGTTC
GACCGGGTCCTTGGTGGCGGCATCGTCGATGGATCCCTGATCCTGATTGGCGGGGACCCTGGCATCGGGAAGTCGACGAT
ACTTCTGCAGACGGCCCTGACTCTATCCCAGAATCACGAAGTGCTGTATGTCTCCGGTGAGGAATCACTGGAACAGATCA
AGTTGCGCGCGGACCGGCTGACTGAAGGGAGTGATCGGCTGAACGTCTATAGCGAGACAAACCTTTTCTACATCCATGAT
GAAATAAAACAGCTGGATCCGGATTTCCTGATCATCGACTCCATCCAGACCATATACAATCCTGATGTGACCAGTGCTCC
CGGCAGTGTCTCCCAGGTGCGGGAGTGTACACAGAGCCTGATGAATATCGCGAAAAGCGGCAATGTCGCAACCTTCATCG
TCGGTCACGTGACCAAGGAGGGGCAGATTGCCGGACCAAGGATGCTCGAGCATATGGTGGATACGGTACTTTATTTCGAA
GGGGATCAGCACCATACGTATCGCATGCTCCGGGCAGTCAAGAACCGCTTCGGATCGACGAATGAAATGGGCATGTTCGA
GATGAAGAGCGAAGGGCTGAAGGAAGTGCTCAACCCTTCGGAAATATTCCTGGAGGAGCGCTCGAAGAACACTCCGGGTT
CGGCCATCGTGGCTACCATGGAAGGGACACGGGCCCTGCTGGTTGAAGTCCAGGCACTCGTCACGCCGACGCATTTCCAT
AATCCGCGGCGCATGGCCACAGGCATCGATCAAAACCGGCTCTCCCTGCTGATGGCGGTGCTCGAGAAGAGCGAAGGCCT
GCTCATGCAGCAGCATGACGCCTACATCAAAGTGGCGGGGGGCGTGCGTCTGGATGAGCCGGCAGTCGACCTCAGTGTCA
TCGTCAGCATCGCTTCAAGCTTCAAGGCCGCCCAGGTCAGAGGCGATGACTGCTTCATCGGTGAAGTCGGACTTACGGGT
GAGGTCAGGCGGGTCACCAAGATAGAACAGAGACTCCAGGAGGCGGCGAAGCTCGGTTTCAACCGTGCAATCATTCCGGC
GTCGAATATGAGTGGATTGGAGGTGCCGGAAGGCATCGAAGTCATCAGCGTCCGCACCTTGAGGGATGCGCTGAAAGTCG
CAATTACAAAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.816

99.781

0.637
  radA Streptococcus pneumoniae Rx1

59.071

98.906

0.584
  radA Streptococcus pneumoniae D39

59.071

98.906

0.584
  radA Streptococcus pneumoniae R6

59.071

98.906

0.584
  radA Streptococcus pneumoniae TIGR4

59.071

98.906

0.584
  radA Streptococcus mitis NCTC 12261

59.071

98.906

0.584
  radA Streptococcus mitis SK321

59.071

98.906

0.584