Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH543_RS17325 Genome accession   NZ_CP157090
Coordinates   3382722..3383351 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain UTME-14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3377722..3388351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH543_RS17310 (ABH543_17305) helD 3377964..3380018 (-) 2055 WP_064559378.1 DNA helicase IV -
  ABH543_RS17315 (ABH543_17310) yccF 3380141..3380587 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABH543_RS17320 (ABH543_17315) yccS 3380597..3382759 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ABH543_RS17325 (ABH543_17320) sxy/tfoX 3382722..3383351 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH543_RS17330 (ABH543_17325) sulA 3383570..3384079 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABH543_RS17335 (ABH543_17330) ompA 3384436..3385476 (+) 1041 WP_000750416.1 porin OmpA -
  ABH543_RS17340 (ABH543_17335) matP 3385552..3386004 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABH543_RS17345 (ABH543_17340) ycbZ 3386190..3387950 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=901830 ABH543_RS17325 WP_000839153.1 3382722..3383351(-) (sxy/tfoX) [Escherichia coli strain UTME-14]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=901830 ABH543_RS17325 WP_000839153.1 3382722..3383351(-) (sxy/tfoX) [Escherichia coli strain UTME-14]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1