Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SCB77_RS10485 Genome accession   NZ_CP138332
Coordinates   2519991..2521376 (-) Length   461 a.a.
NCBI ID   WP_320186386.1    Uniprot ID   -
Organism   Sphingobacterium bambusae strain KACC 22910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2514991..2526376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCB77_RS10470 (SCB77_10470) nagB 2515944..2517869 (-) 1926 WP_320186383.1 glucosamine-6-phosphate deaminase -
  SCB77_RS10475 (SCB77_10475) - 2517996..2519159 (-) 1164 WP_320186384.1 methionine aminotransferase -
  SCB77_RS10480 (SCB77_10480) - 2519238..2519906 (+) 669 WP_320186385.1 TlpA disulfide reductase family protein -
  SCB77_RS10485 (SCB77_10485) radA 2519991..2521376 (-) 1386 WP_320186386.1 DNA repair protein RadA Machinery gene
  SCB77_RS10490 (SCB77_10490) - 2521468..2521974 (+) 507 WP_320186387.1 sigma-70 family RNA polymerase sigma factor -
  SCB77_RS10495 (SCB77_10495) - 2521974..2522582 (+) 609 WP_320186388.1 hypothetical protein -
  SCB77_RS10500 (SCB77_10500) - 2522585..2523775 (-) 1191 WP_320186389.1 dipeptidase -
  SCB77_RS10505 (SCB77_10505) - 2523750..2525480 (-) 1731 WP_320186390.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50554.98 Da        Isoelectric Point: 6.7510

>NTDB_id=901820 SCB77_RS10485 WP_320186386.1 2519991..2521376(-) (radA) [Sphingobacterium bambusae strain KACC 22910]
MAKSKSTYFCQHCGYESAKWLGQCPSCKQWNSFVEELVEKGNSKVPEWRSSAAPSSGKRVNKAAVINEIVYQDEQRLATP
DREFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALGIPQVKTLYISGEESEQQIKMRAERLVQNSKANCYILTETSTQ
NIFKQVEVVQPDIVVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEPVSGVAIAAMLEGMRPIMIEVQALVSN
SAFGTPQRTSTGFDTKRLSMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVAALISSQQDIPLSSQLTFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGIFISKYNTKGLDAKKYDIAIRPLAKLEDLFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=901820 SCB77_RS10485 WP_320186386.1 2519991..2521376(-) (radA) [Sphingobacterium bambusae strain KACC 22910]
ATGGCTAAATCAAAATCAACATATTTCTGCCAACATTGTGGGTACGAGTCTGCTAAATGGCTAGGGCAATGTCCCTCCTG
TAAGCAGTGGAACAGTTTCGTGGAAGAGCTTGTGGAGAAAGGGAATTCCAAGGTTCCCGAATGGCGCAGCAGCGCAGCTC
CCTCCTCCGGTAAGCGCGTTAACAAGGCGGCGGTGATCAATGAAATTGTGTATCAAGATGAGCAACGCCTCGCAACACCC
GATCGCGAATTTAACCGTGTGTTAGGCGGCGGTATTGTCCCTGGATCGTTGGTGTTGATTGGCGGGGAGCCGGGCATTGG
GAAGTCCACGCTGATGCTACAACTGGCCTTGGGCATTCCACAGGTGAAGACACTGTATATTTCTGGCGAGGAAAGTGAGC
AGCAGATCAAGATGCGCGCAGAACGCTTGGTACAAAATTCTAAAGCCAATTGCTATATCTTAACGGAAACGTCTACCCAA
AATATATTTAAGCAGGTGGAGGTGGTGCAGCCGGATATTGTGGTGATCGACTCTATTCAAACGTTGCACTCTTCGCAAAT
TGAATCGGCTCCTGGCTCGGTTTCTCAAGTACGCGAATGTACAGCCGAGCTGTTGCGTTTTGCGAAGGAAACAAGTACGC
CGGTTTTTATCGTCGGTCATATCACAAAAGATGGCTCCATTGCCGGGCCAAAAGTGCTCGAGCATATGGTTGATACGGTG
CTGCAGTTTGAGGGCGATCGCCATCATGTCTACCGTATTTTGCGTGCCGTAAAGAATCGCTTTGGATCCTCTTCAGAGTT
AGGTATTTATGAGATGCAAGGCTCGGGACTACGGGAGGTCTCGAACCCTTCTGAGATTATGCTGTCACAGCGTGAAGAAC
CCGTCAGTGGCGTGGCGATAGCCGCTATGCTGGAAGGTATGCGCCCTATCATGATCGAAGTACAGGCTTTGGTGAGTAAT
TCTGCCTTCGGAACGCCGCAACGTACCAGTACAGGCTTTGATACGAAAAGGTTGAGCATGCTCTTAGCGGTGCTAGAAAA
GAGATTTGGCTTTCGCCTGAGTGCGCAGGATGTATTCCTAAATATAGCCGGCGGCCTGCGGGTGGAAGATCCAGCCATTG
ACCTTGCTGTCGTGGCTGCACTGATTTCCTCGCAACAGGATATTCCGCTTTCTTCCCAACTGACCTTCGCCGGCGAAGTC
GGCCTGTCCGGTGAGATCCGTGCCGTTAATAGAATAGAGCAACGTATCGCCGAAGCGGAGAAGTTGGGCTTCGAAGGGAT
TTTTATTTCCAAATACAACACGAAAGGTCTAGATGCTAAGAAGTACGACATCGCCATCCGTCCGCTAGCCAAACTCGAAG
ATTTATTTCGTGCGTTGTTTGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.916

100

0.531
  radA Streptococcus pneumoniae Rx1

52.061

100

0.521
  radA Streptococcus pneumoniae D39

52.061

100

0.521
  radA Streptococcus pneumoniae R6

52.061

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.061

100

0.521
  radA Streptococcus mitis NCTC 12261

51.844

100

0.518
  radA Streptococcus mitis SK321

51.627

100

0.516