Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SD207_RS16050 Genome accession   NZ_CP138324
Coordinates   3406697..3407023 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain JBAB     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3401697..3412023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS16030 (SD207_16030) - 3401803..3402432 (-) 630 WP_000219964.1 FHA domain-containing protein -
  SD207_RS16035 (SD207_16035) gspD 3402473..3404743 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  SD207_RS16040 (SD207_16040) - 3404785..3405621 (-) 837 WP_000870031.1 type II secretion system protein N -
  SD207_RS16045 (SD207_16045) gspN 3405621..3406364 (-) 744 WP_002044831.1 type II secretion system protein N -
  SD207_RS16050 (SD207_16050) hns 3406697..3407023 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SD207_RS16055 (SD207_16055) - 3407218..3407658 (-) 441 WP_000661569.1 thioesterase family protein -
  SD207_RS16060 (SD207_16060) - 3407666..3408859 (-) 1194 WP_000681777.1 hypothetical protein -
  SD207_RS16065 (SD207_16065) - 3408869..3409708 (-) 840 WP_002044812.1 hypothetical protein -
  SD207_RS16070 (SD207_16070) - 3409717..3410484 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  SD207_RS16075 (SD207_16075) hemC 3410489..3411406 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=901774 SD207_RS16050 WP_000801427.1 3406697..3407023(-) (hns) [Acinetobacter baumannii strain JBAB]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=901774 SD207_RS16050 WP_000801427.1 3406697..3407023(-) (hns) [Acinetobacter baumannii strain JBAB]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1