Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   SD207_RS14910 Genome accession   NZ_CP138324
Coordinates   3156899..3157699 (-) Length   266 a.a.
NCBI ID   WP_193789719.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3151899..3162699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS14890 (SD207_14890) - 3152964..3153662 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  SD207_RS14895 (SD207_14895) hisS 3153691..3154983 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  SD207_RS14900 (SD207_14900) ispG 3154980..3156095 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  SD207_RS14905 (SD207_14905) - 3156117..3156908 (-) 792 WP_000405161.1 RodZ domain-containing protein -
  SD207_RS14910 (SD207_14910) pilF 3156899..3157699 (-) 801 WP_193789719.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  SD207_RS14915 (SD207_14915) rlmN 3157715..3158947 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SD207_RS14920 (SD207_14920) ndk 3159070..3159501 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  SD207_RS14925 (SD207_14925) iscX 3159615..3159815 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  SD207_RS14930 (SD207_14930) - 3159915..3160466 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  SD207_RS14935 (SD207_14935) - 3160491..3161789 (-) 1299 WP_085940557.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30124.47 Da        Isoelectric Point: 9.2307

>NTDB_id=901766 SD207_RS14910 WP_193789719.1 3156899..3157699(-) (pilF) [Acinetobacter baumannii strain JBAB]
MSTPKLKIMLCMGVAVALLTSGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRESYISMLELAEIFYLQQQVPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=901766 SD207_RS14910 WP_193789719.1 3156899..3157699(-) (pilF) [Acinetobacter baumannii strain JBAB]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGAATCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGGTTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

98.872

100

0.989
  pilF Acinetobacter baylyi ADP1

73.462

97.744

0.718