Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SD207_RS02280 Genome accession   NZ_CP138324
Coordinates   465815..466699 (+) Length   294 a.a.
NCBI ID   WP_002044981.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460815..471699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS02255 (SD207_02255) - 461214..462461 (-) 1248 WP_000893467.1 YihY family inner membrane protein -
  SD207_RS02260 (SD207_02260) wrbA 462749..463342 (+) 594 WP_002045006.1 NAD(P)H:quinone oxidoreductase -
  SD207_RS02265 (SD207_02265) - 463394..463969 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  SD207_RS02270 (SD207_02270) - 464042..464755 (-) 714 WP_000201542.1 DUF3108 domain-containing protein -
  SD207_RS02275 (SD207_02275) - 464913..465584 (-) 672 WP_001193955.1 hypothetical protein -
  SD207_RS02280 (SD207_02280) tonB2 465815..466699 (+) 885 WP_002044981.1 energy transducer TonB Machinery gene
  SD207_RS02285 (SD207_02285) ybeY 466789..467265 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  SD207_RS02290 (SD207_02290) - 467275..468363 (-) 1089 WP_000122983.1 PhoH family protein -
  SD207_RS02295 (SD207_02295) miaB 468401..469852 (-) 1452 WP_002044971.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33624.56 Da        Isoelectric Point: 9.4087

>NTDB_id=901751 SD207_RS02280 WP_002044981.1 465815..466699(+) (tonB2) [Acinetobacter baumannii strain JBAB]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKMQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=901751 SD207_RS02280 WP_002044981.1 465815..466699(+) (tonB2) [Acinetobacter baumannii strain JBAB]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAATGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99