Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   R8Z54_RS14710 Genome accession   NZ_CP138319
Coordinates   96736..96840 (+) Length   34 a.a.
NCBI ID   WP_272471087.1    Uniprot ID   -
Organism   Agrobacterium fabrum strain L-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 91736..101840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8Z54_RS14695 - 92645..94369 (+) 1725 WP_318764695.1 glycerol-3-phosphate dehydrogenase/oxidase -
  R8Z54_RS14700 - 94372..95214 (+) 843 WP_035215305.1 class I fructose-bisphosphate aldolase -
  R8Z54_RS14705 - 95207..96706 (+) 1500 WP_143242128.1 FGGY-family carbohydrate kinase -
  R8Z54_RS14710 pilJ 96736..96840 (+) 105 WP_272471087.1 methyl-accepting chemotaxis protein Machinery gene
  R8Z54_RS14715 - 96962..97942 (-) 981 WP_080813500.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  R8Z54_RS14720 - 98137..98481 (+) 345 WP_080813502.1 hypothetical protein -
  R8Z54_RS14725 - 98512..99657 (-) 1146 WP_080813504.1 alpha-hydroxy acid oxidase -
  R8Z54_RS14730 - 99766..100779 (-) 1014 WP_318764696.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 34 a.a.        Molecular weight: 3460.96 Da        Isoelectric Point: 9.7608

>NTDB_id=901742 R8Z54_RS14710 WP_272471087.1 96736..96840(+) (pilJ) [Agrobacterium fabrum strain L-11]
MIAFQRNLLALNARVETARVGEAGSGFAAVAQGA

Nucleotide


Download         Length: 105 bp        

>NTDB_id=901742 R8Z54_RS14710 WP_272471087.1 96736..96840(+) (pilJ) [Agrobacterium fabrum strain L-11]
GTGATAGCCTTCCAGAGGAATTTGCTGGCGCTCAACGCTAGGGTAGAAACGGCGCGGGTCGGCGAGGCGGGCAGCGGTTT
TGCCGCCGTGGCGCAGGGGGCGTGA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(2-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

64.516

91.176

0.588